Detailed information of component protein


Summary

Component ID T6CP000208
Component protein type TssG
T6SS ID (Type) T6SS00026 experimental (Type i4b)
Strain Ralstonia solanacearum GMI1000
Replicon plasmid pGMI1000MP
Sequence Protein sequence (364 a.a.); Nucleotide sequence (1092 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RS_RS20695
Coordinate (Strand) 938058..939149 (+)
NCBI ID WP_011004046.1
RefSeq NC_003296
Uniprot ID Q8XRT3_RALSO
KEGG ID rso:RSp0748
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.7e-91 19..343
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-363 MRTSQRRIDPGVIRRLLRQPYRYEFFQAVRLLEQLFARRGNAVSEHALATRVSFRNTLSLSFPPSELQAIEAARVTPDMLESDAAFIAALEDGVLDTVAITPTFFGMLGVQGALPLRYTEIVAEREAVWRDRAARAFFDIFSNRATALFYLAWKKYRLPFQYEVDADRHYLPLLLSLAGAADATLRRDLSDTPGPVHDEALAGYATAIRHRPVSAAYLRRVLADYFRAPMRVEQFVGNWYRVPPSQYSRLGGTNNVLGATALAGARVWQRDLRVRVWVGPLARAQYRNFLPGAPGARALRKMLTILCGATLEFEIKLILRRQDVAGCTLGAQDSGRIGWDTFLCSHPAQHDRSDAQYTLAPLH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9776 - -


  Protein sequence: 364 a.a.    

>T6CP000208 NC_003296:938058-939149 [Ralstonia solanacearum GMI1000] [TssG]
MRTSQRRIDPGVIRRLLRQPYRYEFFQAVRLLEQLFARRGNAVSEHALATRVSFRNTLSLSFPPSELQAIEAARVTPDML
ESDAAFIAALEDGVLDTVAITPTFFGMLGVQGALPLRYTEIVAEREAVWRDRAARAFFDIFSNRATALFYLAWKKYRLPF
QYEVDADRHYLPLLLSLAGAADATLRRDLSDTPGPVHDEALAGYATAIRHRPVSAAYLRRVLADYFRAPMRVEQFVGNWY
RVPPSQYSRLGGTNNVLGATALAGARVWQRDLRVRVWVGPLARAQYRNFLPGAPGARALRKMLTILCGATLEFEIKLILR
RQDVAGCTLGAQDSGRIGWDTFLCSHPAQHDRSDAQYTLAPLH*

  Nucleotide sequence: 1092 bp    

>T6CP000208 NC_003296:938058-939149 [Ralstonia solanacearum GMI1000] [TssG]
ATGCGCACCTCGCAGCGGCGAATCGATCCTGGTGTGATCCGCAGGCTGCTGCGGCAGCCGTACCGGTACGAGTTCTTCCA
GGCCGTGCGGCTGCTGGAGCAGCTGTTCGCGCGCCGGGGCAACGCCGTGTCCGAGCATGCGCTGGCCACGCGCGTGAGTT
TCCGCAACACGCTGTCGCTGTCGTTTCCGCCCAGCGAGCTGCAGGCCATCGAGGCCGCTCGCGTGACGCCCGACATGCTG
GAGAGCGATGCGGCCTTCATCGCGGCGCTCGAGGACGGCGTGCTCGATACCGTGGCCATCACGCCGACCTTCTTCGGCAT
GCTGGGCGTTCAGGGGGCGCTGCCGCTGCGCTACACCGAGATCGTCGCCGAGCGTGAGGCCGTGTGGCGCGACCGTGCCG
CGCGGGCCTTCTTCGACATCTTCTCGAACCGCGCGACGGCGCTGTTCTACCTGGCCTGGAAGAAGTACCGCCTGCCGTTC
CAGTACGAGGTCGACGCCGACCGGCATTACCTGCCGCTGTTGCTGTCGCTGGCCGGCGCCGCAGACGCGACGCTGCGCCG
CGATCTGTCCGACACGCCGGGGCCGGTCCATGACGAGGCGCTGGCCGGCTATGCCACGGCGATCCGGCATCGGCCCGTGT
CGGCGGCGTACCTGCGGCGCGTGCTGGCGGACTACTTCCGGGCGCCGATGCGCGTCGAACAGTTCGTCGGCAACTGGTAT
CGCGTGCCGCCGTCGCAGTATTCGCGGTTGGGCGGCACCAACAACGTGCTGGGCGCCACCGCGCTGGCCGGTGCCCGCGT
CTGGCAGCGCGACCTGCGGGTGCGCGTGTGGGTCGGCCCGCTGGCGCGCGCGCAGTACCGCAACTTCCTGCCGGGCGCGC
CCGGCGCGCGGGCACTGCGCAAGATGCTGACGATCCTGTGCGGCGCCACGCTCGAATTCGAAATCAAGCTGATCCTGCGG
CGTCAGGACGTGGCCGGCTGCACGCTGGGCGCGCAGGACAGCGGCCGGATCGGTTGGGACACCTTCCTGTGCTCGCATCC
GGCGCAGCACGACCGCAGCGACGCGCAATACACCCTCGCACCGCTGCATTGA