Detailed information of component protein


Summary

Component ID T6CP000205
Component protein type TssD
T6SS ID (Type) T6SS00026 experimental (Type i4b)
Strain Ralstonia solanacearum GMI1000
Replicon plasmid pGMI1000MP
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) RS_RS20680
Coordinate (Strand) 935144..935647 (+)
NCBI ID WP_011004043.1
RefSeq NC_003296
Uniprot ID M4V2U4_RALSL, A0A223GUI7_9RALS, Q8XRT6_RALSO, A0A0K1ZS84_RALSL
KEGG ID rse:F504_4476, rso:RSp0745
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.5e-37 5..139

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MKDIYVKFDSPAIKGESQDKDHKEWIEVNSWSQSIIQPRSATASTAGGHTAERCEHRDMVFSKDLDVVSPLLYQHASGGTTFGEVTIEFFRADGEGNRVKYLEVKLKNAILSEVDSQVAAEGIPTDTFSLRYAAVQWKYTQQKSAGGQGGNSQGAWSLTKNDKTYSV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9747 - -



  Protein sequence: 168 a.a.    

>T6CP000205 NC_003296:935144-935647 [Ralstonia solanacearum GMI1000] [TssD]
MKDIYVKFDSPAIKGESQDKDHKEWIEVNSWSQSIIQPRSATASTAGGHTAERCEHRDMVFSKDLDVVSPLLYQHASGGT
TFGEVTIEFFRADGEGNRVKYLEVKLKNAILSEVDSQVAAEGIPTDTFSLRYAAVQWKYTQQKSAGGQGGNSQGAWSLTK
NDKTYSV*

  Nucleotide sequence: 504 bp    

>T6CP000205 NC_003296:935144-935647 [Ralstonia solanacearum GMI1000] [TssD]
ATGAAGGATATCTACGTCAAGTTCGACAGCCCGGCCATCAAGGGGGAGTCCCAGGACAAGGATCACAAGGAGTGGATCGA
AGTCAACAGCTGGTCCCAGTCGATCATCCAGCCGCGTTCGGCCACGGCCTCGACCGCGGGCGGCCATACCGCCGAGCGTT
GCGAGCACCGCGACATGGTGTTCTCCAAGGACCTGGACGTGGTCAGCCCGCTGCTGTACCAGCACGCTTCGGGCGGCACG
ACCTTCGGTGAAGTGACGATCGAGTTCTTCCGCGCCGACGGTGAAGGCAACCGCGTGAAGTACCTCGAGGTCAAGCTGAA
GAACGCGATTTTGAGCGAAGTGGATTCGCAGGTGGCTGCCGAGGGCATCCCGACCGATACGTTCAGCCTGCGCTACGCGG
CCGTGCAGTGGAAGTACACCCAGCAGAAGAGCGCCGGCGGCCAGGGCGGCAACTCGCAGGGCGCCTGGAGCCTGACCAAG
AACGACAAGACCTACTCGGTTTAA