Detailed information of component protein


Summary

Component ID T6CP000201
Component protein type TssK
T6SS ID (Type) T6SS00026 experimental (Type i4b)
Strain Ralstonia solanacearum GMI1000
Replicon plasmid pGMI1000MP
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) RS_RS20655
Coordinate (Strand) 930037..931383 (-)
NCBI ID WP_011004038.1
RefSeq NC_003296
Uniprot ID A0A223GUN3_9RALS, Q8XRU1_RALSO, A0A0S4XDK0_RALSL
KEGG ID rso:RSp0740
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5e-139 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 VSYSAKILWGEGLFLRPQHFQRQDAYHESRLHATAQMIQPYGWGIRHAQFDTDALASGVLRATELSLFFPDGELYFAPQADTLPPPLVLDAIPAGVSELTFHLALYPLQDSGGNYREQLEGTTVSRFVSTEAETADLFTEAESAAITYLKKSVKLVADTEPRDQFIALPIVRVRRTGTGGFELDDSFVAPSLSINASAVLYVRLRRLLDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTANAAFAALSHLYHHPDLHPERLFQEMLRLAGALMTFTKSYTLADLPAYDHDKPGPVFSRLDTIVRELLDTVISTRYFAIALEETRPSFHLGRIDSGKIDDKTSFYLSVSADMPAAELVEAIPARFKVGAPDDVDKLVLSSMPGVPLTYTPQVPPAIPVRPGACYFAVEARGMLYERMLQAQTITIYAPAGIRELKLELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9948 - -


  Protein sequence: 449 a.a.    

>T6CP000201 NC_003296:c931383-930037 [Ralstonia solanacearum GMI1000] [TssK]
VSYSAKILWGEGLFLRPQHFQRQDAYHESRLHATAQMIQPYGWGIRHAQFDTDALASGVLRATELSLFFPDGELYFAPQA
DTLPPPLVLDAIPAGVSELTFHLALYPLQDSGGNYREQLEGTTVSRFVSTEAETADLFTEAESAAITYLKKSVKLVADTE
PRDQFIALPIVRVRRTGTGGFELDDSFVAPSLSINASAVLYVRLRRLLDALQAKVNALYGFHREPTKNIIEFRSGDIASF
WLLHTANAAFAALSHLYHHPDLHPERLFQEMLRLAGALMTFTKSYTLADLPAYDHDKPGPVFSRLDTIVRELLDTVISTR
YFAIALEETRPSFHLGRIDSGKIDDKTSFYLSVSADMPAAELVEAIPARFKVGAPDDVDKLVLSSMPGVPLTYTPQVPPA
IPVRPGACYFAVEARGMLYERMLQAQTITIYAPAGIRELKLELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP000201 NC_003296:c931383-930037 [Ralstonia solanacearum GMI1000] [TssK]
GTGAGCTATTCCGCCAAAATCCTCTGGGGCGAAGGGCTGTTCCTGCGGCCCCAGCACTTCCAGCGCCAGGACGCGTACCA
CGAGTCCCGCCTGCATGCGACCGCGCAGATGATCCAGCCGTACGGATGGGGCATCCGCCATGCGCAGTTCGACACCGATG
CCCTCGCCAGCGGCGTGCTGCGCGCGACCGAGCTGTCGCTGTTCTTTCCGGACGGCGAGCTGTACTTCGCGCCGCAGGCC
GATACCCTGCCGCCGCCGCTCGTGCTCGACGCCATCCCGGCCGGTGTGTCGGAGCTGACCTTCCACCTCGCGCTCTATCC
GCTGCAGGACAGCGGCGGCAACTACCGCGAGCAGCTTGAGGGCACCACCGTGTCGCGCTTCGTCTCCACCGAAGCAGAAA
CGGCGGACCTGTTCACCGAGGCCGAGTCCGCGGCCATCACCTACCTCAAGAAGTCGGTGAAGCTGGTGGCGGACACCGAG
CCGCGCGACCAGTTCATCGCGCTGCCCATCGTGCGGGTGCGCCGGACGGGCACCGGCGGCTTCGAGCTGGACGACAGCTT
CGTCGCGCCGAGCCTGTCGATCAATGCGTCCGCCGTGCTGTACGTGCGCCTGCGCCGGCTGCTGGACGCGCTGCAGGCCA
AGGTCAACGCGCTGTACGGCTTCCACCGCGAGCCGACCAAGAACATCATCGAATTCCGCTCGGGCGATATTGCATCGTTC
TGGCTGCTGCACACCGCCAATGCCGCCTTTGCGGCGCTGTCGCACCTCTATCACCACCCGGACCTGCATCCGGAGCGGCT
GTTCCAGGAGATGCTGCGCCTGGCCGGCGCACTGATGACGTTCACCAAGAGCTACACCCTGGCCGACCTGCCCGCCTACG
ACCACGACAAACCCGGCCCGGTGTTCTCGCGGCTGGACACCATCGTGCGCGAGCTGCTCGATACCGTGATCTCCACGCGC
TACTTCGCGATCGCGCTGGAGGAGACGCGGCCCTCGTTCCATCTCGGCCGGATCGACTCCGGCAAGATCGACGACAAGAC
CAGCTTCTACCTCTCGGTGTCGGCCGACATGCCGGCGGCGGAACTGGTGGAGGCGATTCCCGCGCGCTTCAAGGTCGGCG
CGCCGGACGACGTGGACAAGCTGGTGCTGTCGTCCATGCCGGGCGTGCCGCTCACCTACACGCCGCAGGTGCCGCCCGCC
ATTCCGGTGCGGCCGGGCGCGTGCTACTTCGCGGTCGAAGCGCGCGGCATGCTGTACGAACGCATGCTGCAGGCCCAGAC
CATCACCATCTATGCCCCGGCCGGTATCCGGGAACTCAAACTTGAACTCATCGCGGTGACTTCATGA