Detailed information of component protein


Summary

Component ID T6CP000167
Component protein type TssK
T6SS ID (Type) T6SS00022 insolico (Type Unknown)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS18955
Coordinate (Strand) 4004760..4006106 (+)
NCBI ID WP_002212105.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.1e-152 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQDYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGSEDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMMLQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRAISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQLPYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9696 - -


  Protein sequence: 449 a.a.    

>T6CP000167 NC_003143:4004760-4006106 [Yersinia pestis CO92] [TssK]
MPTKNRVIWREGLFIKPQHFQQQQRHNDYQLQRRIIALQGYSYGFSSLILNQELLKLGRIGLTVASGNMADGTVFDIPYQ
DYSPKPLDVLNCNDAASRDIYLALPMLNDAINEVAGQQGQAPGTLRYREHSDDVRDLHTEGGDVSQLVLAQLAPRLMQGS
EDLSAYSVLPLCRVKEKRPDGSLILDEEFIPTCTTLSVSTQLKGFMDEVEGTLVERAQLLAKRIGSPGQQGIADVAEFMM
LQVFNRTQPLFTHLAHQAILHPEAFYHQLVQTCGELRTFTDESRLAGTFPVYNHDNLTDSFQPLFLAMRQALSTVLTPRA
ISIQLHMQAHGIRVATINDSDLLRSADFVLAVRAQIPQEQLRRQFVQQTKITSLEKIRDLVSVQLPGVPLVALSAAPRQL
PYHSGYTYFMLDLQSPVWKEIQQSNAIAFHVSGDFPDLDMQFWAIRSS*

  Nucleotide sequence: 1347 bp    

>T6CP000167 NC_003143:4004760-4006106 [Yersinia pestis CO92] [TssK]
ATGCCAACCAAAAATCGAGTGATTTGGCGCGAAGGGCTGTTCATCAAACCGCAACATTTTCAACAACAGCAACGGCATAA
CGACTACCAGTTACAACGCCGGATTATCGCTCTGCAAGGGTATAGCTATGGTTTCAGTTCACTGATCCTGAATCAGGAGT
TATTGAAATTAGGGCGTATTGGCTTGACGGTCGCCAGTGGCAATATGGCTGATGGCACGGTGTTTGATATCCCTTATCAA
GACTATTCACCAAAGCCATTGGATGTACTGAATTGTAATGATGCGGCCAGCCGTGACATTTATCTGGCATTACCGATGCT
AAACGATGCCATTAATGAGGTGGCAGGCCAGCAGGGGCAAGCGCCGGGAACCCTTCGCTATCGTGAACATAGCGATGATG
TCCGCGATTTACATACCGAAGGGGGCGATGTCAGCCAGTTGGTACTGGCACAACTGGCACCGCGTTTGATGCAAGGCTCG
GAAGACCTCAGTGCTTACTCGGTCCTGCCGCTGTGTCGGGTCAAAGAGAAACGGCCTGACGGTTCGCTGATCTTGGATGA
AGAGTTCATTCCCACCTGCACCACGCTCAGTGTCTCCACGCAGTTAAAAGGCTTTATGGATGAAGTCGAAGGGACATTGG
TTGAACGCGCCCAACTACTGGCGAAACGTATTGGTTCTCCCGGTCAGCAGGGGATCGCGGATGTGGCTGAATTTATGATG
TTGCAGGTCTTTAACCGGACACAGCCGCTCTTTACCCATTTGGCACATCAGGCGATTCTGCATCCAGAAGCGTTTTACCA
TCAGTTGGTACAAACCTGCGGTGAACTGCGCACGTTTACCGATGAATCACGCTTAGCGGGCACCTTCCCGGTTTATAACC
ACGATAACTTGACCGACAGTTTTCAGCCGTTGTTTTTGGCGATGCGTCAGGCATTAAGCACCGTGCTCACACCGCGTGCC
ATCTCTATCCAGTTGCATATGCAGGCACACGGTATTCGCGTTGCGACCATTAATGATAGTGATCTATTGCGCAGTGCTGA
TTTTGTGCTGGCGGTTCGGGCGCAAATACCTCAAGAACAATTGCGTCGGCAGTTTGTTCAGCAAACCAAAATCACCTCAC
TTGAGAAAATACGCGATTTGGTCAGTGTCCAACTGCCCGGCGTCCCGTTGGTGGCACTGTCCGCCGCACCGCGCCAGCTC
CCTTACCACTCGGGATACACCTACTTCATGCTGGATCTGCAAAGCCCTGTATGGAAAGAAATCCAGCAAAGCAATGCGAT
TGCCTTCCACGTCTCGGGTGATTTCCCTGATCTGGACATGCAATTCTGGGCAATCAGGAGCAGCTAA