Detailed information of component protein
Summary
External database links
Locus tag (Gene) | YPO_RS03530 |
Coordinate (Strand) | 538864..539847 (+) |
NCBI ID | WP_002210476.1 |
RefSeq | NC_003143 |
Uniprot ID | Q66EP6_YERPS, A0A0E1NXN6_YERPA, A0A0H2YDR4_YERPN, A0A380PKE1_YERPE, A0A3G5KET5_YERPU |
KEGG ID | ype:YPO0505, ypn:YPN_0380, ypu:BZ21_4028, ypj:CH55_2247, ypa:YPA_3591, ypw:CH59_1356, ypq:DJ40_1723, ypr:BZ20_1449, ypl:CH46_409, ypo:BZ17_1911, ypv:BZ15_3066, yps:YPTB0646 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 2.1e-61 | 19..312 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-327 | MASLQTLKNTFLPGISASQDFFELLRRIERATPEQGRLGTQRDRSHLRLRIIQPADMGFAPREVSDIRQTLNTHQHLAEITIFCRHFGLFAPYGPLPIHVTEHARNEALAKRNQAFEHFAGILSQRMAILHYRSWAQMHVAVGHDRASANPFMNHVRQIAGLTPQQALNSHVDRVRRCFPGVYLPGRGSLRKLQEILSLYFSVPIRVEARKGLWIDDSRNIESQRMGRLGNTRIGSRFFDVQHSLVLSIGPVSDPQYLDFQRNSKRINTLVQICHDFVRHRMVLDVQLIIQTSPNMACRLGGGTLSRHSWLKPGSALSIQPIYRTVT |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9852 | - | - |
Protein sequence: 328 a.a.
>T6CP000131 NC_003143:538864-539847 [Yersinia pestis CO92] [TssG]
MASLQTLKNTFLPGISASQDFFELLRRIERATPEQGRLGTQRDRSHLRLRIIQPADMGFAPREVSDIRQTLNTHQHLAEI
TIFCRHFGLFAPYGPLPIHVTEHARNEALAKRNQAFEHFAGILSQRMAILHYRSWAQMHVAVGHDRASANPFMNHVRQIA
GLTPQQALNSHVDRVRRCFPGVYLPGRGSLRKLQEILSLYFSVPIRVEARKGLWIDDSRNIESQRMGRLGNTRIGSRFFD
VQHSLVLSIGPVSDPQYLDFQRNSKRINTLVQICHDFVRHRMVLDVQLIIQTSPNMACRLGGGTLSRHSWLKPGSALSIQ
PIYRTVT*
MASLQTLKNTFLPGISASQDFFELLRRIERATPEQGRLGTQRDRSHLRLRIIQPADMGFAPREVSDIRQTLNTHQHLAEI
TIFCRHFGLFAPYGPLPIHVTEHARNEALAKRNQAFEHFAGILSQRMAILHYRSWAQMHVAVGHDRASANPFMNHVRQIA
GLTPQQALNSHVDRVRRCFPGVYLPGRGSLRKLQEILSLYFSVPIRVEARKGLWIDDSRNIESQRMGRLGNTRIGSRFFD
VQHSLVLSIGPVSDPQYLDFQRNSKRINTLVQICHDFVRHRMVLDVQLIIQTSPNMACRLGGGTLSRHSWLKPGSALSIQ
PIYRTVT*
Nucleotide sequence: 984 bp
>T6CP000131 NC_003143:538864-539847 [Yersinia pestis CO92] [TssG]
ATGGCTAGCCTCCAGACGCTGAAAAACACGTTTCTGCCGGGTATCTCGGCCAGTCAGGACTTTTTCGAGTTGCTGCGTCG
CATTGAGCGTGCCACTCCAGAGCAAGGCCGGCTTGGCACCCAACGTGATCGTAGCCATCTGCGGCTACGTATTATTCAGC
CTGCCGATATGGGATTTGCACCGCGTGAAGTGAGTGATATCAGGCAAACGCTGAACACTCATCAGCATCTGGCAGAGATC
ACCATTTTCTGCCGCCATTTTGGTTTATTTGCCCCGTATGGCCCGTTGCCAATACATGTTACCGAACATGCTCGTAACGA
AGCGTTGGCTAAACGTAATCAGGCCTTTGAACATTTTGCGGGCATTCTCAGCCAGCGAATGGCGATCTTGCATTATCGCT
CTTGGGCCCAAATGCACGTCGCCGTGGGGCATGATCGCGCGTCAGCCAATCCCTTTATGAACCATGTGCGTCAAATCGCG
GGCCTAACGCCGCAGCAAGCGCTGAATTCACATGTGGATCGGGTACGGCGTTGCTTTCCGGGGGTGTATCTGCCGGGCAG
AGGATCATTACGCAAATTACAGGAGATCCTGAGCCTGTATTTCTCGGTTCCTATCCGTGTTGAAGCCCGTAAAGGATTGT
GGATTGACGACTCGCGCAATATAGAAAGCCAACGTATGGGACGGTTGGGTAACACGCGTATTGGCAGCCGTTTCTTCGAT
GTGCAGCACAGCCTGGTGTTATCTATTGGTCCGGTATCTGACCCCCAATATCTGGATTTTCAACGCAACAGCAAACGCAT
TAACACTCTGGTGCAAATCTGCCATGACTTTGTCCGCCATCGGATGGTGCTGGACGTGCAATTAATCATACAGACCTCAC
CCAATATGGCTTGTCGTCTTGGCGGTGGAACGCTCAGTCGCCATAGCTGGTTAAAGCCAGGCTCAGCCTTGAGTATACAG
CCAATTTATAGAACGGTTACCTAG
ATGGCTAGCCTCCAGACGCTGAAAAACACGTTTCTGCCGGGTATCTCGGCCAGTCAGGACTTTTTCGAGTTGCTGCGTCG
CATTGAGCGTGCCACTCCAGAGCAAGGCCGGCTTGGCACCCAACGTGATCGTAGCCATCTGCGGCTACGTATTATTCAGC
CTGCCGATATGGGATTTGCACCGCGTGAAGTGAGTGATATCAGGCAAACGCTGAACACTCATCAGCATCTGGCAGAGATC
ACCATTTTCTGCCGCCATTTTGGTTTATTTGCCCCGTATGGCCCGTTGCCAATACATGTTACCGAACATGCTCGTAACGA
AGCGTTGGCTAAACGTAATCAGGCCTTTGAACATTTTGCGGGCATTCTCAGCCAGCGAATGGCGATCTTGCATTATCGCT
CTTGGGCCCAAATGCACGTCGCCGTGGGGCATGATCGCGCGTCAGCCAATCCCTTTATGAACCATGTGCGTCAAATCGCG
GGCCTAACGCCGCAGCAAGCGCTGAATTCACATGTGGATCGGGTACGGCGTTGCTTTCCGGGGGTGTATCTGCCGGGCAG
AGGATCATTACGCAAATTACAGGAGATCCTGAGCCTGTATTTCTCGGTTCCTATCCGTGTTGAAGCCCGTAAAGGATTGT
GGATTGACGACTCGCGCAATATAGAAAGCCAACGTATGGGACGGTTGGGTAACACGCGTATTGGCAGCCGTTTCTTCGAT
GTGCAGCACAGCCTGGTGTTATCTATTGGTCCGGTATCTGACCCCCAATATCTGGATTTTCAACGCAACAGCAAACGCAT
TAACACTCTGGTGCAAATCTGCCATGACTTTGTCCGCCATCGGATGGTGCTGGACGTGCAATTAATCATACAGACCTCAC
CCAATATGGCTTGTCGTCTTGGCGGTGGAACGCTCAGTCGCCATAGCTGGTTAAAGCCAGGCTCAGCCTTGAGTATACAG
CCAATTTATAGAACGGTTACCTAG