Detailed information of component protein


Summary

Component ID T6CP000125
Component protein type TssA
T6SS ID (Type) T6SS00017 experimental (Type i3)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (338 a.a.); Nucleotide sequence (1014 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPO_RS03500
Coordinate (Strand) 532701..533714 (+)
NCBI ID WP_002210482.1
RefSeq NC_003143
Uniprot ID Q66EQ2_YERPS, A0A0U1QY97_YERP3, Q0WJG6_YERPE, A0A3G5ITG5_YERPU
KEGG ID yps:YPTB0640, ype:YPO0499, ypi:YpsIP31758_3437
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-12 21..129

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-337 MILKRMDNNMSDIFPQALFGVEYDPAYGEIESILSQLDESADPLSRPHEPPQINWHHISEQANKLLEQCFDLRVMLWFIRANIHIKGISALYDGFMRINAQTQDTDVVIYPQSEEPPLNSGHAAALGWLSTAQCIAELKTARLTEEHPYILQDLITTEALPNGQERYFVTSSTLFLTVNNYFQQNGLPDLKDQLTKVDMLLEQIESYANQSTESYQLHCEQLRIFLKNNISQLAQLNAPEHDDPETVYQKIDSHESLDTQSFNSNDKSIRSRQEIIMMLDRILEYFQHYEPSHPAPIFIRRTKEMIGMDFYSIVEEILPEAVITLKQFTGKTNLPFR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9824 - -



  Protein sequence: 338 a.a.    

>T6CP000125 NC_003143:532701-533714 [Yersinia pestis CO92] [TssA]
MILKRMDNNMSDIFPQALFGVEYDPAYGEIESILSQLDESADPLSRPHEPPQINWHHISEQANKLLEQCFDLRVMLWFIR
ANIHIKGISALYDGFMRINAQTQDTDVVIYPQSEEPPLNSGHAAALGWLSTAQCIAELKTARLTEEHPYILQDLITTEAL
PNGQERYFVTSSTLFLTVNNYFQQNGLPDLKDQLTKVDMLLEQIESYANQSTESYQLHCEQLRIFLKNNISQLAQLNAPE
HDDPETVYQKIDSHESLDTQSFNSNDKSIRSRQEIIMMLDRILEYFQHYEPSHPAPIFIRRTKEMIGMDFYSIVEEILPE
AVITLKQFTGKTNLPFR*

  Nucleotide sequence: 1014 bp    

>T6CP000125 NC_003143:532701-533714 [Yersinia pestis CO92] [TssA]
TTGATTTTAAAACGGATGGACAATAATATGAGTGACATATTTCCTCAAGCATTATTCGGCGTTGAATATGATCCGGCCTA
TGGCGAGATTGAGTCCATCCTCTCTCAATTAGATGAGTCTGCGGACCCCCTTTCCCGCCCGCATGAACCCCCTCAAATAA
ACTGGCACCATATCAGTGAGCAAGCCAATAAGCTGCTAGAGCAATGTTTTGATTTACGTGTAATGCTTTGGTTTATAAGG
GCAAATATTCATATAAAAGGAATATCGGCCCTCTATGATGGCTTTATGCGCATTAATGCACAAACCCAAGATACTGATGT
TGTTATCTACCCTCAATCGGAAGAACCGCCATTAAATAGTGGGCATGCCGCCGCATTAGGTTGGTTATCTACAGCACAAT
GTATTGCAGAGCTTAAGACTGCACGCCTTACAGAAGAGCACCCTTACATTTTACAAGATCTTATTACGACTGAAGCGTTA
CCCAATGGCCAAGAGAGATATTTTGTTACATCTTCGACATTATTTTTAACTGTCAATAATTATTTCCAACAGAATGGATT
GCCAGATTTAAAAGACCAATTGACAAAAGTAGATATGTTGTTGGAACAAATTGAGTCCTATGCAAATCAATCCACAGAGA
GTTACCAACTGCATTGTGAACAATTACGTATTTTCTTAAAAAATAATATTTCTCAGCTTGCACAATTGAATGCCCCAGAA
CATGACGATCCCGAAACTGTTTATCAAAAAATAGACAGTCATGAATCTCTTGATACTCAGTCCTTTAATTCAAATGATAA
GAGCATTCGCTCACGGCAAGAGATCATTATGATGCTGGACCGTATTCTAGAGTACTTTCAACATTATGAGCCTAGTCATC
CAGCCCCAATATTCATTCGCCGTACCAAAGAGATGATAGGTATGGATTTTTATTCCATTGTTGAAGAAATTCTGCCTGAA
GCTGTAATTACATTAAAACAGTTTACCGGAAAAACTAACCTACCGTTTCGATGA