Detailed information of component protein


Summary

Component ID T6CP000094
Component protein type TssC
T6SS ID (Type) T6SS00013 experimental (Type i1)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PP_RS13675
Coordinate (Strand) 2998984..3000474 (-)
NCBI ID WP_010953543.1
RefSeq NC_002947
Uniprot ID Q88JM6_PSEPK, A0A2V4FTN1_9PSED
KEGG ID ppu:PP_2623
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.3e-122 70..369
VipB_2 PF18945.2 2.1e-45 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MPKPSSTAITTDATADTLSNTTLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDPDQLINKHRADQMIAEIDRMLGKQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEILHVSKEDLLDDFENAADVTCSGIYKHVYTAGYGQFGGEPVAAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHVALTGPRFMLRSAYHPQEQPIESFNYNEDIAGQHDNYLWGNSAFLLASCINDSFARYRWCPNIIGPQSGGAVEDLPVHLYESLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKHFPKTPEGLQAQTNYKLGTQLPYLFIVNRLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARIEVSDVAGDPGWYQVSLAVRPHFKYMGANFEISLVGRLDTQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9045 - -


  Protein sequence: 497 a.a.    

>T6CP000094 NC_002947:c3000474-2998984 [Pseudomonas putida KT2440] [TssC]
MPKPSSTAITTDATADTLSNTTLLDQIMAETKLVPAQEGYQIARQGVSAFITEILKSNDPDQLINKHRADQMIAEIDRML
GKQMDAILHQPEFQQLESSWRSLKLLVDRTDFRENIKLEILHVSKEDLLDDFENAADVTCSGIYKHVYTAGYGQFGGEPV
AAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPAPEFFNLNSFEELPNLKEIKDLFAGPRHAKWRAFRESEDARHV
ALTGPRFMLRSAYHPQEQPIESFNYNEDIAGQHDNYLWGNSAFLLASCINDSFARYRWCPNIIGPQSGGAVEDLPVHLYE
SLGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKHFPKTPEGLQAQTNYKLGTQLPYLFIVN
RLAHYIKVLQREQIGSWKERRDLESELNKWIKQYVADQENPSADVRSRRPLRAARIEVSDVAGDPGWYQVSLAVRPHFKY
MGANFEISLVGRLDTQ*

  Nucleotide sequence: 1491 bp    

>T6CP000094 NC_002947:c3000474-2998984 [Pseudomonas putida KT2440] [TssC]
ATGCCCAAGCCAAGCAGCACCGCCATCACCACAGACGCAACGGCCGACACATTGAGCAATACCACCCTGCTCGACCAGAT
CATGGCAGAAACCAAACTGGTACCTGCCCAGGAGGGCTACCAGATTGCCAGGCAGGGCGTATCTGCCTTCATCACCGAAA
TCCTCAAGAGCAATGATCCAGATCAGCTGATCAACAAGCACCGAGCCGACCAGATGATTGCCGAGATCGACCGAATGCTC
GGCAAACAGATGGATGCCATTCTGCATCAGCCTGAGTTCCAGCAGCTTGAATCATCATGGCGCAGCCTGAAACTTCTGGT
CGACCGCACGGACTTCAGGGAGAACATCAAGCTTGAAATCTTGCATGTCAGTAAAGAGGACCTGCTCGACGACTTCGAAA
ATGCTGCTGACGTTACCTGCAGCGGTATCTACAAGCATGTTTACACCGCGGGTTATGGCCAATTCGGGGGAGAGCCGGTT
GCGGCCATGGTAGGCAACTACAACTTCGGCCCCTCTTCCCCTGACATCAAGTTGCTAAGTTACATGGCCTCCGTTGGCGC
CATGTCCCATGCCCCTTTTCTTGCTGCACCTGCCCCCGAATTCTTCAATTTGAACAGCTTCGAGGAGCTGCCTAACCTCA
AGGAAATAAAAGACCTCTTCGCCGGCCCTCGGCATGCCAAGTGGCGCGCTTTTCGTGAAAGCGAAGACGCCCGCCACGTC
GCCCTGACCGGGCCGCGCTTCATGCTTCGCTCCGCTTACCACCCGCAGGAACAACCGATCGAGAGCTTCAACTACAACGA
AGACATCGCCGGGCAGCACGACAACTACCTGTGGGGCAATTCTGCTTTTCTGTTAGCCAGTTGCATCAACGACAGCTTCG
CCCGCTACCGCTGGTGCCCGAACATCATCGGCCCCCAATCCGGCGGTGCTGTCGAAGACTTGCCGGTCCATCTGTACGAA
TCCCTGGGCCAGTTGCAGGCCAAGATTCCTACCGAGGTGCTGATATCCGACCGCAAGGAATTCGAACTGGCCGAAGAGGG
CTTCATCGCCCTGACCATGCGTAAAGACAGCGACAACGCCGCGTTCTTCTCCGCCAACTCGGTACAAAAGCCCAAGCACT
TCCCGAAAACCCCTGAGGGGCTTCAGGCACAGACCAACTACAAGCTGGGTACCCAGTTGCCCTACCTGTTCATCGTCAAC
CGGCTCGCCCACTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGTTGGAAAGAGCGCCGTGACCTTGAGTCCGAGCT
GAACAAATGGATCAAGCAGTACGTCGCCGACCAGGAGAACCCGTCTGCCGACGTTCGCAGCCGCCGGCCGCTGCGTGCCG
CCCGTATTGAGGTCTCGGATGTTGCGGGTGACCCGGGCTGGTACCAGGTTTCGCTCGCCGTACGCCCGCACTTCAAGTAC
ATGGGCGCGAACTTCGAGATTTCCCTGGTCGGGCGGCTCGATACGCAATGA