Detailed information of component protein


Summary

Component ID T6CP000092
Component protein type TssG
T6SS ID (Type) T6SS00013 experimental (Type i1)
Strain Pseudomonas putida KT2440
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) PP_RS13660
Coordinate (Strand) 2995827..2996843 (-)
NCBI ID WP_010953540.1
RefSeq NC_002947
Uniprot ID Q88JM9_PSEPK, A0A2V4FII8_9PSED
KEGG ID ppu:PP_2620
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7e-81 19..321

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MANTDRQATADLADKLLCEAHQYNFFQLLERLHGLHGDDLEPRWPDKATRRRVRLACDPRLTFPVSDVYKAQRMPAEEARYRIIATFLGLHGTDSPLPTYYLEQVAYEHAHGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGASDGFSQYVFALLGLNDKQLRGDTALPWSRLLSFAGVIASRSRAPGTVAGIIAHCFDLKQVHIREFETRSVVTPSRQLASLGRTNGQLGSTFMIGSRTRTRSSKFTIVISELDQTQLRDLLPSGINFGRLRALIDFLLRDGLAYDLELRLKQSALSPFCLHRSQGAYLGWTSFVDDRHGQISPVVRIRGRS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9954 - -



  Protein sequence: 339 a.a.    

>T6CP000092 NC_002947:c2996843-2995827 [Pseudomonas putida KT2440] [TssG]
MANTDRQATADLADKLLCEAHQYNFFQLLERLHGLHGDDLEPRWPDKATRRRVRLACDPRLTFPVSDVYKAQRMPAEEAR
YRIIATFLGLHGTDSPLPTYYLEQVAYEHAHGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGASDGFSQYVFALL
GLNDKQLRGDTALPWSRLLSFAGVIASRSRAPGTVAGIIAHCFDLKQVHIREFETRSVVTPSRQLASLGRTNGQLGSTFM
IGSRTRTRSSKFTIVISELDQTQLRDLLPSGINFGRLRALIDFLLRDGLAYDLELRLKQSALSPFCLHRSQGAYLGWTSF
VDDRHGQISPVVRIRGRS*

  Nucleotide sequence: 1017 bp    

>T6CP000092 NC_002947:c2996843-2995827 [Pseudomonas putida KT2440] [TssG]
ATGGCCAATACAGACCGGCAAGCAACCGCTGATCTAGCCGACAAGTTGCTCTGCGAAGCGCACCAGTACAACTTCTTCCA
GTTGCTGGAGCGGTTGCACGGGCTGCATGGCGATGACCTGGAACCCCGTTGGCCGGACAAGGCCACCCGGCGGCGCGTGC
GCCTGGCCTGCGACCCACGGCTGACCTTCCCTGTTTCGGACGTGTACAAAGCCCAGCGGATGCCCGCTGAGGAAGCGCGC
TACCGCATCATTGCCACATTCCTGGGGTTGCACGGCACCGATTCGCCATTGCCCACCTATTACCTGGAACAGGTGGCGTA
TGAACATGCGCATGGCATCGGTGTACGGCCGGCCTTCTTCGACTTTTTCAACCATTACCTGCTCAGCCTGTTGCACCGTA
TCTGGCGCAAGTACCGCTATTACATCCGCTTCCAGCCAGGTGCCAGTGACGGGTTCTCGCAGTACGTGTTTGCCCTGCTG
GGGCTTAACGACAAGCAGTTGCGAGGGGACACGGCGCTGCCCTGGAGCCGCCTGCTCAGTTTTGCCGGCGTGATCGCCAG
CCGCAGCCGAGCGCCGGGCACTGTAGCCGGCATCATTGCGCACTGCTTCGACCTCAAGCAGGTGCACATCCGCGAGTTCG
AGACGCGATCAGTCGTCACGCCGTCCAGGCAGCTTGCAAGCCTGGGGCGGACCAACGGCCAGCTGGGCAGCACGTTCATG
ATTGGCAGCCGCACGCGCACCCGCAGCAGCAAGTTCACCATCGTGATCAGCGAACTCGACCAGACGCAGCTGCGGGACTT
GCTGCCCAGCGGCATCAACTTCGGCCGTTTGCGTGCACTGATCGACTTTCTGCTGCGTGACGGGCTGGCCTATGACCTGG
AGCTGCGCCTCAAGCAGAGCGCGTTGTCACCCTTCTGCTTGCACCGCAGCCAGGGCGCATACCTGGGCTGGACCAGCTTC
GTCGACGACCGGCATGGCCAGATCAGCCCGGTTGTACGCATCCGGGGGCGCTCATGA