Detailed information of component protein


Summary

Component ID T6CP000077
Component protein type TssM
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (1202 a.a.); Nucleotide sequence (3606 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04130
Coordinate (Strand) 856646..860251 (+)
NCBI ID WP_010925954.1
RefSeq NC_002927
Uniprot ID A0A0H3LJC4_BORBR, A0A0C6P3Z8_BORBO
KEGG ID bbh:BN112_2624, bbr:BB0816
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 5.8e-95 209..466
IcmF-related PF06761.14 4.5e-82 520..828
IcmF_C PF06744.14 1.6e-29 1079..1182
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MIPRLFGWLFSR
Transmembrane helix 13-35 GLWSFLGLVALALLVWIAGPLLA
Outside 36-45 IGALRPLESE
Transmembrane helix 46-65 TARVLVIAALFAFALLRLLW
Inside 66-459 RKWREGRLNAQLLGQLRRPARPEAEAAAEPPPSDLRELEGRFDEAVELLRKTRFDGGGGRGWLQRYSRQYLYQLPWYVIIGAPGSGKTTALVNSGLDFPLAERFGKAALRGVGGTRNCDWWFTDDAVLLDTAGRYTTHESDPTGDEESWRGFLGLLTRFRGRQPINGAMLTVSIEDLLAASDAERARHAAVLRRRLQELREQLGIHFPVYVLVTKADLLAGFEQYFASFSREDLEQVWGFTLPYARAQEPDFDLYEAFHAEYRLLQRRLDDALPEVLAAEPDEARRALAYLLPQQFAGLQAVLGHFLSDVFASSRFEERLVPRGVYFTSGTQGGETFDQVTGHLKRYLRIESGPAPAAAEEGRSFFLKRLLQDVIFPEAGLAGRNLRWERRYRR
Transmembrane helix 460-482 LHWAGYGLITLAFLGLAAGWLAS
Outside 483-1201 YGNNVRYLDEVARRVPTVDKLGRDIKITRSGDVLGLMPFLDGLWYLPRDAAFEPDAPPLSYRFGLYQGGKMHAAMQGVYRGTLDSVLLPQVARRIEAALRAARADDLEYGYEALRAYLMLYEADHYDAEFMHAWLLSDMQGTLPEGYTRRQYDLMSLHLRQLAQGGVLASPFPRDEALVRQARDELARHTLAQRAYSRLRRMLAGADDQPPTTAVTLGGPQASAVFVRKSGKPLAQGIAALYTYRGYWDVFNPRVTRVAERLRSDDAWVLDIAPPGVLDEAARQQLIVDIKRLYLNDYVARWDGYLDDLALAPRSSLLQSIQLARTLSAPDSPLVRLTQGVARETTLLRDAGGDERSLADQARDRVSSTREALEQMFGPTGPGAATRADAGDGKLERVVDQHFEPWRRLARADGQGGAPIAATTSLVNELYTYLTAADAALRSASPAPASDVVTKLRAEAGRLPRPLRDVLDDLSTGAAGEVSGVARERLGEDLYATIGLFCRQAIAGRYPFAPGSPRDVAPNDLARLFAPNGMMDEFFQKNLVSQIDVSEARWRFKPGMDGTPGQASALLDSFQRAAAIRDAYFMAGSAEPAFRVSIRPVEMDPAITQFVMDVDGQTVRYAHGPQVATSVQWPGPRGANQVRIELTPQAGAAGLSASGPWALNRLLDQARVTRGASPEISLASFDIGGRKVVLEIRAGSVRSPFHLAEMRGFSCPGRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9903 - -


  Protein sequence: 1202 a.a.    

>T6CP000077 NC_002927:856646-860251 [Bordetella bronchiseptica RB50] [TssM]
MIPRLFGWLFSRGLWSFLGLVALALLVWIAGPLLAIGALRPLESETARVLVIAALFAFALLRLLWRKWREGRLNAQLLGQ
LRRPARPEAEAAAEPPPSDLRELEGRFDEAVELLRKTRFDGGGGRGWLQRYSRQYLYQLPWYVIIGAPGSGKTTALVNSG
LDFPLAERFGKAALRGVGGTRNCDWWFTDDAVLLDTAGRYTTHESDPTGDEESWRGFLGLLTRFRGRQPINGAMLTVSIE
DLLAASDAERARHAAVLRRRLQELREQLGIHFPVYVLVTKADLLAGFEQYFASFSREDLEQVWGFTLPYARAQEPDFDLY
EAFHAEYRLLQRRLDDALPEVLAAEPDEARRALAYLLPQQFAGLQAVLGHFLSDVFASSRFEERLVPRGVYFTSGTQGGE
TFDQVTGHLKRYLRIESGPAPAAAEEGRSFFLKRLLQDVIFPEAGLAGRNLRWERRYRRLHWAGYGLITLAFLGLAAGWL
ASYGNNVRYLDEVARRVPTVDKLGRDIKITRSGDVLGLMPFLDGLWYLPRDAAFEPDAPPLSYRFGLYQGGKMHAAMQGV
YRGTLDSVLLPQVARRIEAALRAARADDLEYGYEALRAYLMLYEADHYDAEFMHAWLLSDMQGTLPEGYTRRQYDLMSLH
LRQLAQGGVLASPFPRDEALVRQARDELARHTLAQRAYSRLRRMLAGADDQPPTTAVTLGGPQASAVFVRKSGKPLAQGI
AALYTYRGYWDVFNPRVTRVAERLRSDDAWVLDIAPPGVLDEAARQQLIVDIKRLYLNDYVARWDGYLDDLALAPRSSLL
QSIQLARTLSAPDSPLVRLTQGVARETTLLRDAGGDERSLADQARDRVSSTREALEQMFGPTGPGAATRADAGDGKLERV
VDQHFEPWRRLARADGQGGAPIAATTSLVNELYTYLTAADAALRSASPAPASDVVTKLRAEAGRLPRPLRDVLDDLSTGA
AGEVSGVARERLGEDLYATIGLFCRQAIAGRYPFAPGSPRDVAPNDLARLFAPNGMMDEFFQKNLVSQIDVSEARWRFKP
GMDGTPGQASALLDSFQRAAAIRDAYFMAGSAEPAFRVSIRPVEMDPAITQFVMDVDGQTVRYAHGPQVATSVQWPGPRG
ANQVRIELTPQAGAAGLSASGPWALNRLLDQARVTRGASPEISLASFDIGGRKVVLEIRAGSVRSPFHLAEMRGFSCPGR
S*

  Nucleotide sequence: 3606 bp    

>T6CP000077 NC_002927:856646-860251 [Bordetella bronchiseptica RB50] [TssM]
ATGATCCCGCGCCTGTTCGGATGGCTGTTCTCGCGCGGCCTGTGGAGCTTCCTGGGCCTGGTGGCGCTGGCCCTGCTGGT
GTGGATCGCCGGGCCGCTGCTGGCGATCGGCGCGCTGCGCCCGCTGGAAAGCGAGACCGCGCGCGTACTGGTCATCGCCG
CGCTGTTCGCCTTCGCGCTGCTGCGCCTGCTGTGGCGCAAGTGGCGCGAAGGCCGCCTCAACGCCCAGCTGCTGGGCCAG
CTGCGCCGGCCGGCCCGTCCCGAGGCCGAGGCCGCGGCCGAGCCGCCGCCTTCGGACCTGCGCGAACTGGAAGGCCGTTT
CGACGAGGCGGTGGAGCTGTTGCGCAAGACGCGCTTCGACGGAGGCGGCGGGCGCGGCTGGCTGCAGCGCTATTCGCGCC
AATACCTGTACCAGCTGCCCTGGTACGTCATCATCGGCGCGCCAGGCTCGGGCAAGACCACGGCCCTGGTCAACTCGGGC
CTGGACTTCCCGCTGGCCGAGCGCTTCGGCAAGGCCGCGCTGCGCGGCGTGGGCGGCACCCGCAACTGCGATTGGTGGTT
CACCGACGACGCGGTGCTGCTCGATACCGCCGGCCGCTACACCACCCATGAAAGCGACCCCACCGGCGACGAGGAGTCCT
GGCGCGGCTTTCTCGGCCTGTTGACGCGCTTTCGGGGCCGCCAGCCCATCAACGGCGCCATGCTCACCGTCAGCATCGAG
GACTTGCTGGCCGCGTCCGACGCCGAGCGCGCGCGCCACGCCGCGGTGCTGCGCCGGCGCCTGCAGGAGCTGCGCGAGCA
GCTGGGCATCCATTTCCCGGTCTATGTGCTGGTGACCAAGGCCGACCTGCTGGCCGGCTTCGAGCAGTACTTCGCCTCGT
TCAGCCGCGAAGACCTGGAGCAGGTATGGGGCTTCACCTTGCCCTATGCGCGCGCCCAGGAGCCGGACTTCGACCTGTAC
GAAGCCTTTCATGCCGAGTACCGGCTGCTGCAGCGCCGGCTCGACGATGCCCTGCCCGAAGTGCTGGCCGCCGAGCCGGA
CGAGGCGCGCCGCGCGCTGGCCTACCTGCTGCCGCAGCAGTTCGCCGGCCTGCAGGCCGTGCTGGGCCATTTCCTCAGCG
ACGTGTTCGCCAGCTCGCGCTTCGAGGAGCGCCTGGTGCCGCGCGGCGTGTACTTCACCAGCGGCACCCAGGGCGGCGAG
ACCTTCGACCAGGTCACCGGCCACCTCAAGCGCTATCTGCGCATCGAAAGCGGGCCGGCCCCGGCCGCCGCCGAGGAAGG
CCGCAGCTTCTTCCTCAAGCGGCTGCTGCAGGACGTGATCTTTCCCGAGGCCGGCCTGGCCGGCCGCAACCTGCGCTGGG
AGCGCCGCTACCGCCGCCTGCACTGGGCCGGCTACGGCCTGATCACGCTGGCGTTCCTGGGCCTGGCGGCGGGCTGGCTG
GCCAGCTACGGCAACAACGTGCGCTATCTCGACGAAGTGGCGCGCCGCGTGCCGACGGTGGACAAGCTGGGGCGCGATAT
CAAGATCACCCGCTCGGGCGATGTGCTGGGCCTGATGCCCTTCCTGGACGGCCTGTGGTACCTGCCGCGCGACGCCGCCT
TCGAGCCGGACGCGCCGCCGCTGTCCTATCGCTTCGGGCTGTACCAGGGCGGCAAGATGCACGCCGCGATGCAGGGCGTT
TATCGCGGCACGCTCGACAGCGTCCTGCTGCCGCAGGTGGCGCGCCGCATCGAGGCGGCGCTGCGCGCGGCCCGCGCCGA
CGACCTGGAGTACGGCTACGAGGCCCTGCGCGCCTACCTGATGCTGTACGAGGCCGACCACTACGACGCCGAGTTCATGC
ACGCCTGGCTGCTGTCCGACATGCAGGGCACGCTGCCCGAGGGCTACACGCGCCGGCAGTACGACCTGATGTCGCTGCAC
CTGCGCCAGCTGGCGCAGGGCGGCGTGCTGGCCTCGCCGTTTCCGCGCGACGAGGCGCTGGTGCGGCAGGCGCGCGACGA
ACTGGCGCGCCACACGCTGGCGCAGCGCGCCTACAGCCGGCTGCGCCGCATGCTGGCCGGCGCCGACGATCAGCCGCCGA
CCACCGCGGTGACGCTGGGCGGGCCGCAGGCCAGCGCCGTCTTCGTGCGCAAGAGCGGCAAGCCGCTGGCCCAGGGCATC
GCGGCGCTGTACACCTACCGCGGCTATTGGGACGTGTTCAATCCGCGCGTCACGCGCGTGGCCGAGCGCCTGCGCAGCGA
CGATGCCTGGGTCCTGGACATCGCGCCGCCGGGCGTGCTGGACGAGGCTGCGCGCCAGCAGCTCATCGTCGACATCAAGC
GCCTGTACCTCAACGACTACGTGGCGCGCTGGGACGGCTACCTGGACGACCTGGCGCTGGCGCCGCGCAGCTCGCTGCTG
CAAAGCATCCAGCTGGCGCGCACCCTGTCGGCGCCCGATTCGCCGCTGGTGCGGCTGACCCAGGGCGTGGCGCGCGAGAC
CACGCTGCTGCGCGACGCGGGCGGCGACGAGCGCTCGCTGGCGGACCAGGCGCGCGACCGCGTCAGCAGCACGCGCGAGG
CGCTGGAGCAGATGTTCGGCCCGACCGGCCCGGGCGCGGCCACGCGCGCCGACGCCGGCGACGGCAAGCTGGAGCGCGTG
GTCGACCAGCACTTCGAGCCATGGCGCAGGCTGGCGCGCGCCGACGGGCAGGGCGGCGCGCCGATTGCCGCCACCACCAG
CCTGGTCAACGAGCTGTACACCTATCTGACGGCGGCCGACGCGGCTCTGCGCAGCGCCAGCCCGGCGCCCGCCTCCGATG
TGGTGACCAAGCTGCGCGCCGAGGCTGGCCGCCTGCCGCGGCCCTTGCGCGACGTGCTCGACGACTTGTCCACCGGCGCG
GCGGGCGAAGTGTCCGGCGTGGCGCGCGAGCGGCTGGGCGAAGACCTGTACGCCACCATCGGCCTGTTCTGCCGCCAGGC
CATCGCCGGCCGCTATCCTTTCGCGCCCGGCTCGCCGCGCGACGTCGCGCCCAATGACCTGGCGCGGCTGTTCGCGCCCA
ACGGCATGATGGACGAGTTCTTCCAGAAGAACCTGGTCAGCCAGATCGATGTGTCCGAGGCGCGCTGGCGCTTCAAGCCG
GGCATGGACGGCACGCCGGGCCAGGCGTCGGCGCTGCTGGATTCGTTCCAGCGCGCCGCCGCGATCCGCGACGCCTATTT
CATGGCCGGCAGCGCGGAGCCGGCCTTTCGCGTCTCGATCCGTCCGGTGGAAATGGACCCGGCCATCACGCAATTCGTCA
TGGACGTGGACGGCCAGACCGTGCGCTATGCGCATGGCCCGCAGGTCGCCACTTCCGTGCAATGGCCGGGGCCGCGCGGC
GCCAACCAGGTGCGCATCGAGCTGACGCCCCAGGCCGGCGCGGCGGGCCTGTCGGCCAGCGGACCGTGGGCACTCAATCG
CCTGCTCGACCAGGCCCGCGTCACGCGCGGCGCCTCGCCCGAGATCTCGCTGGCCAGCTTCGATATCGGCGGCCGCAAAG
TGGTGCTGGAGATCCGCGCGGGCAGCGTCAGGAGCCCCTTTCACCTGGCCGAGATGCGGGGTTTTTCCTGCCCGGGCCGT
TCATGA