Detailed information of component protein


Summary

Component ID T6CP000076
Component protein type TssL
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (427 a.a.); Nucleotide sequence (1281 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04125
Coordinate (Strand) 855369..856649 (+)
NCBI ID WP_003808318.1
RefSeq NC_002927
Uniprot ID A0A0H3LN29_BORBR, Q7W1G0_BORPA, A0A5Q1BVJ3_BORPP, A0A0C6P7C9_BORBO
KEGG ID bbh:BN112_2625, bpa:BPP0729, bbr:BB0815
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.4e-73 37..239
OmpA PF00691.22 3.8e-13 305..403
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-216 MHAANPPFPDFGADAAADPGAASRLRPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRGARGEYPRALSPHWRDTPVQQALRRLP
Transmembrane helix 217-239 VPLWAYGALAAALALALFWGLSW
Inside 240-426 RLGERSDAVFAAVARLKPPTVQIAPAPRPAPAPRLAVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPAPHARTPEEGATP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9712 - -


  Protein sequence: 427 a.a.    

>T6CP000076 NC_002927:855369-856649 [Bordetella bronchiseptica RB50] [TssL]
MHAANPPFPDFGADAAADPGAASRLRPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQ
QAGIPNETILGARYCLCTALDEAAALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLL
LGFEGRYRVIDNGRTQLETLRQRLLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWR
LGERSDAVFAAVARLKPPTVQIAPAPRPAPAPRLAVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPV
LARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRS
VNRRVEITVMVPPAPHARTPEEGATP*

  Nucleotide sequence: 1281 bp    

>T6CP000076 NC_002927:855369-856649 [Bordetella bronchiseptica RB50] [TssL]
ATGCACGCCGCCAATCCTCCCTTTCCCGACTTCGGCGCCGACGCGGCGGCCGACCCCGGCGCGGCCAGCCGGCTGCGCCC
GCACGAGTACGTCATCAGCGGCTCCAACCCGCTGGTGGCGGCGGCCAATCCGCTGCTGGACCTGATCCCGCAGATCCGCG
CCACCACGGCCCATCCCGCGCCGGCCATGCTGCGCGAGTACCTGGTCGACGAAGTGCGCCAGTTCGAGCTGCGCGCGCAA
CAGGCCGGCATTCCCAACGAAACCATCCTGGGCGCGCGCTACTGCCTGTGCACGGCGCTGGACGAGGCCGCCGCGCTCAC
GCCGTGGGGCGGGGGCGGCGTATGGTCGGCGCACAGCCTGCTGGTGACGTTCCATAACGAAACCTGGGGCGGCGAGAAGT
TCTTCCAGCTGCTGGCCAAGCTGTCGCAGAACCCGGGCCAGCACCTGGATTTGCTGGAGCTGTTGTACTACTGCCTGCTG
CTGGGCTTCGAGGGCCGCTACCGCGTCATCGACAACGGCCGCACGCAGCTCGAGACCTTGCGCCAGCGCCTGCTGCGCAT
CCTGCGCGGCGCGCGCGGCGAGTATCCGCGCGCGCTCTCGCCGCATTGGCGCGACACGCCGGTGCAGCAGGCGCTGCGCC
GCCTGCCGGTGCCGCTGTGGGCCTACGGGGCGCTGGCGGCGGCGCTGGCGCTGGCGTTGTTCTGGGGCCTGTCGTGGCGC
CTGGGCGAACGCTCGGATGCCGTGTTCGCCGCGGTCGCGCGGCTCAAGCCGCCCACGGTGCAGATCGCCCCGGCGCCGCG
CCCGGCGCCCGCGCCCCGCCTGGCCGTGTTCCTGCAACCCGAGGTGCGCGACCGCCTGGTGACGGTGCGCGACGAGGTCG
ATCGCAGCGTGGTGGTGCTGCGCGGCGACGGGCTGTTCGAGTCGGGCGCGGTCGCGGTGCGCGACCGCTATGCGCCGGTG
CTGGCGCGGGTGGCCGAGGCGCTGGGCCAGACGCGCGGCGATATCGTGGTGCGCGGCTATACCGACAACGTGCCCATCCG
CACGGCGCGCTTTCCGTCCAACTGGCATCTGTCGCAGGCGCGCGCCGAGGCGGTCAAGGCGGTGATCGACGCGCGCCTGG
GCCAGGCCGGACGCGTGCGCGCAGAAGGGCGCGGCGAGGCCGATCCGCTGGCCCCCAATGACACCCCCGCCGGACGCTCG
GTCAACCGGCGGGTCGAAATTACCGTGATGGTGCCGCCGGCGCCGCATGCCCGCACGCCCGAAGAAGGAGCCACGCCATG
A