Detailed information of component protein


Summary

Component ID T6CP000075
Component protein type TssK
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04120
Coordinate (Strand) 854014..855348 (+)
NCBI ID WP_003808316.1
RefSeq NC_002927
Uniprot ID A0A0H3LI59_BORBR, A0A0C6P852_BORBO
KEGG ID bbr:BB0814, bbh:BN112_2626
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.6e-157 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MALDNKVVWSEGMFLRPQHFQQFERHIEAQLRVRAAAASGCGWGYTALEIDRDALALGKLALARAAGVLPDGTPFEFERADEGPPALDIDPAMRDARVMLALPRRRAGACEVVYEDGADTLARYCVHEGEIEDSGSVGLEPALVQLGRLRLRLVPETELGDEWVALGAARVLERRADHRVVLDEMYIPPWLAADANPALRGYAGELSGLLQARAAALAQRLAQPGRGGVSEVADFLLLALVNRYAGALWHARQVPALHPERLFRDWLMLACDLATYTCATRLPEVLPDYRHDDLQASFGPLMAELRRSLSVVLEQHAVQIPLHDRGQGVRVAQIADAELLRSAGFVLAVHADMPAETVRTRFPAQVKIGPVERIRDLVHLQLPGVAVRALPVAPRQIPYSAGHVYFELDKNGEFWRQLERTGALALHLAGEFPGLALEFWAVRD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9794 - -


  Protein sequence: 445 a.a.    

>T6CP000075 NC_002927:854014-855348 [Bordetella bronchiseptica RB50] [TssK]
MALDNKVVWSEGMFLRPQHFQQFERHIEAQLRVRAAAASGCGWGYTALEIDRDALALGKLALARAAGVLPDGTPFEFERA
DEGPPALDIDPAMRDARVMLALPRRRAGACEVVYEDGADTLARYCVHEGEIEDSGSVGLEPALVQLGRLRLRLVPETELG
DEWVALGAARVLERRADHRVVLDEMYIPPWLAADANPALRGYAGELSGLLQARAAALAQRLAQPGRGGVSEVADFLLLAL
VNRYAGALWHARQVPALHPERLFRDWLMLACDLATYTCATRLPEVLPDYRHDDLQASFGPLMAELRRSLSVVLEQHAVQI
PLHDRGQGVRVAQIADAELLRSAGFVLAVHADMPAETVRTRFPAQVKIGPVERIRDLVHLQLPGVAVRALPVAPRQIPYS
AGHVYFELDKNGEFWRQLERTGALALHLAGEFPGLALEFWAVRD*

  Nucleotide sequence: 1335 bp    

>T6CP000075 NC_002927:854014-855348 [Bordetella bronchiseptica RB50] [TssK]
ATGGCACTGGACAACAAGGTCGTCTGGTCGGAGGGCATGTTCCTGCGGCCGCAACATTTCCAGCAGTTCGAACGGCATAT
CGAGGCGCAGTTGCGCGTGCGCGCCGCGGCGGCCTCGGGCTGCGGCTGGGGCTACACCGCGCTGGAGATCGATCGCGACG
CGCTGGCGCTGGGCAAGCTGGCGCTGGCGCGCGCCGCGGGCGTGCTGCCCGACGGCACGCCGTTCGAGTTCGAGCGCGCC
GACGAGGGGCCGCCGGCGCTGGACATCGACCCGGCCATGCGCGATGCGCGCGTGATGCTGGCGCTGCCGCGCCGCCGCGC
CGGCGCCTGCGAAGTGGTCTACGAAGACGGCGCGGATACGCTGGCGCGCTATTGCGTGCATGAAGGCGAGATCGAGGACT
CCGGCTCGGTGGGCCTGGAGCCGGCGCTGGTGCAGCTGGGCCGTTTGCGCCTGCGGCTGGTTCCCGAAACCGAGCTGGGC
GACGAATGGGTGGCGCTGGGCGCCGCGCGGGTGCTGGAGCGCCGCGCCGACCACCGCGTGGTGCTCGACGAGATGTACAT
CCCGCCCTGGCTGGCCGCCGACGCCAATCCGGCGCTGCGCGGCTATGCCGGCGAGCTGTCCGGGCTGCTGCAGGCGCGCG
CAGCGGCGCTGGCGCAGCGGCTGGCGCAGCCGGGCCGCGGCGGCGTCTCCGAAGTGGCCGACTTCCTGCTGCTGGCGCTG
GTAAACCGCTACGCCGGCGCGCTGTGGCACGCGCGCCAGGTGCCGGCCCTGCATCCCGAACGGCTGTTTCGCGACTGGCT
GATGCTGGCCTGCGACCTGGCCACCTATACCTGCGCCACGCGCCTGCCCGAGGTGCTGCCCGATTACCGCCACGACGACC
TGCAGGCCAGTTTCGGGCCGCTCATGGCCGAGCTGCGCCGCTCGCTGTCGGTGGTGCTGGAGCAGCACGCCGTGCAGATC
CCGCTGCATGACCGCGGCCAGGGCGTGCGCGTGGCGCAGATCGCCGATGCCGAACTGCTGCGCAGCGCCGGCTTCGTGCT
GGCCGTGCACGCCGACATGCCGGCCGAGACGGTGCGCACGCGCTTTCCGGCCCAGGTCAAGATCGGCCCGGTCGAGCGCA
TCCGCGACCTGGTGCACCTGCAATTGCCCGGCGTGGCGGTGCGCGCCCTGCCGGTGGCGCCGCGCCAGATTCCCTACAGC
GCGGGCCACGTGTACTTCGAGCTGGACAAGAACGGCGAGTTCTGGCGGCAGCTGGAGCGCACCGGCGCGCTGGCCCTGCA
CCTGGCGGGCGAGTTTCCCGGCCTGGCGCTGGAGTTCTGGGCCGTGCGCGACTGA