Detailed information of component protein


Summary

Component ID T6CP000074
Component protein type TssJ
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (181 a.a.); Nucleotide sequence (543 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AYT36_RS04115
Coordinate (Strand) 853426..853968 (+)
NCBI ID WP_010925953.1
RefSeq NC_002927
Uniprot ID A0A0H3LI29_BORBR
KEGG ID bbr:BB0813
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.9e-37 37..149

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-180 MLVAVPTRRALRAAAWIAVAVLAAGCASTASRKAAPYAIELKADPRVNPDASGRPSPIQVTLYELRSSAEFEARDFFTLEGDAQAALGKSLIETDQVILQPGETRKLSYPGNTEARVVGIVAAYRDLERSPWRIVVPLPQAQNTNIYKFWQFSPNEETVRVAVGGQGVQIVDRERSWWPF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9588 pos: 25-26. AAG-CA. MLVAVPTRRALRAAAWIAVAVLAAG



  Protein sequence: 181 a.a.    

>T6CP000074 NC_002927:853426-853968 [Bordetella bronchiseptica RB50] [TssJ]
MLVAVPTRRALRAAAWIAVAVLAAGCASTASRKAAPYAIELKADPRVNPDASGRPSPIQVTLYELRSSAEFEARDFFTLE
GDAQAALGKSLIETDQVILQPGETRKLSYPGNTEARVVGIVAAYRDLERSPWRIVVPLPQAQNTNIYKFWQFSPNEETVR
VAVGGQGVQIVDRERSWWPF*

  Nucleotide sequence: 543 bp    

>T6CP000074 NC_002927:853426-853968 [Bordetella bronchiseptica RB50] [TssJ]
TTGCTTGTTGCTGTGCCCACGCGGCGCGCGTTGCGCGCGGCGGCCTGGATTGCCGTCGCGGTGCTGGCCGCCGGGTGCGC
GTCCACGGCCAGCCGCAAGGCGGCGCCTTACGCGATCGAGCTGAAGGCCGATCCGCGCGTCAATCCCGATGCCTCGGGCC
GGCCCTCGCCGATCCAGGTCACGCTGTACGAGCTGCGTTCGTCCGCCGAGTTCGAGGCGCGCGATTTCTTCACCCTGGAA
GGCGACGCGCAGGCCGCGCTGGGCAAGTCGCTCATCGAAACCGATCAGGTCATCCTGCAGCCCGGCGAAACCCGCAAGCT
GTCGTATCCGGGCAATACCGAGGCGCGCGTGGTCGGCATCGTGGCGGCCTATCGCGACCTCGAGCGCAGTCCCTGGCGCA
TCGTCGTGCCCCTGCCGCAGGCCCAGAACACCAACATCTACAAGTTCTGGCAGTTCTCGCCCAACGAGGAGACCGTGCGC
GTCGCGGTGGGCGGACAGGGCGTGCAAATCGTCGACCGGGAGCGTTCCTGGTGGCCCTTCTGA