Detailed information of component protein


Summary

Component ID T6CP000073
Component protein type TssH
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (870 a.a.); Nucleotide sequence (2610 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04100
Coordinate (Strand) 849230..851839 (+)
NCBI ID WP_010925951.1
RefSeq NC_002927
Uniprot ID A0A0H3LN26_BORBR, A0A0C6P7D4_BORBO
KEGG ID bbr:BB0810, bbh:BN112_2630
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.8e-35 601..767
AAA_lid_9 PF17871.3 1.2e-26 363..453
ClpB_D2-small PF10431.11 1.3e-12 774..848
AAA PF00004.31 1.8e-09 222..353
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-869 MSDIGRAELFGKLDSLSYRALEDATALCKLRGNPYVELAHWVHAIAHAQDSDLHHIARAFELDLGALQQDLVRALDQLPRGAGAVSDLSEHVDHVVERAWALASLRYGAARIRSGHLLLALLRDPSLRGVLAGMSGQFARVVPDLLLQGLPEMTRGSPEARADAAVADAPPDGGGAAGALARYAVDLTAQARAGRLDPVTGRDDEIRQLIDVLMRRRQNNPLLTGEAGVGKTAVVEGLALRLARGDVPAPLREVALYLLDIGLLQAGAGVKGEFEQRLRQVIDAVQGSERPIVLFIDEIHTLVGAGGAAGTGDAANLLKPALARGQLRTIGATTWAEYKQYIEKDPALTRRFQAIQVHEPDEAGARRMLRGLAGALQAHHGVLLLDEAVEAAVRLSHRYIPARQLPDKAVALLDTACARVAVSQQATPAALEDARRRIDALDLELEIAAREARLDAGPAERVAGLREQGQAARAEADALAARWEREAALAGQVFGLREQLDAADEQSAPALRAALREAADALARSQGEAPLIHPAVDAAAVAAVVADWTGIPVGRMVRDEAQAVLALADTLERRVVGQRHALELIARRIQTARAGLTDPGKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPHSVVLLDEVEKAHADVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLTANVGADLIASLCADPELAPEPDALAAALRAPLRDVFPAALLGRLAAVPYLPLSDSMLAHIVALQFERVGQRLRERHGMDLEVEPAAAELVVARCVEVESGARMVDAILSQRVLPQIGRELLGASLQQRTWRRVRVRAVDGEFACEYE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -


  Protein sequence: 870 a.a.    

>T6CP000073 NC_002927:849230-851839 [Bordetella bronchiseptica RB50] [TssH]
MSDIGRAELFGKLDSLSYRALEDATALCKLRGNPYVELAHWVHAIAHAQDSDLHHIARAFELDLGALQQDLVRALDQLPR
GAGAVSDLSEHVDHVVERAWALASLRYGAARIRSGHLLLALLRDPSLRGVLAGMSGQFARVVPDLLLQGLPEMTRGSPEA
RADAAVADAPPDGGGAAGALARYAVDLTAQARAGRLDPVTGRDDEIRQLIDVLMRRRQNNPLLTGEAGVGKTAVVEGLAL
RLARGDVPAPLREVALYLLDIGLLQAGAGVKGEFEQRLRQVIDAVQGSERPIVLFIDEIHTLVGAGGAAGTGDAANLLKP
ALARGQLRTIGATTWAEYKQYIEKDPALTRRFQAIQVHEPDEAGARRMLRGLAGALQAHHGVLLLDEAVEAAVRLSHRYI
PARQLPDKAVALLDTACARVAVSQQATPAALEDARRRIDALDLELEIAAREARLDAGPAERVAGLREQGQAARAEADALA
ARWEREAALAGQVFGLREQLDAADEQSAPALRAALREAADALARSQGEAPLIHPAVDAAAVAAVVADWTGIPVGRMVRDE
AQAVLALADTLERRVVGQRHALELIARRIQTARAGLTDPGKPVGVFLLCGPSGVGKTETALALAEALYGGEQNLITINMS
EFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPHSVVLLDEVEKAHADVHEIFFQVFDKGWMEDGEGRYIDFRNTVIL
LTANVGADLIASLCADPELAPEPDALAAALRAPLRDVFPAALLGRLAAVPYLPLSDSMLAHIVALQFERVGQRLRERHGM
DLEVEPAAAELVVARCVEVESGARMVDAILSQRVLPQIGRELLGASLQQRTWRRVRVRAVDGEFACEYE*

  Nucleotide sequence: 2610 bp    

>T6CP000073 NC_002927:849230-851839 [Bordetella bronchiseptica RB50] [TssH]
ATGTCCGATATCGGCCGCGCCGAGCTGTTCGGCAAACTCGATTCCCTGTCCTATCGCGCCCTGGAGGACGCCACCGCCCT
GTGCAAGCTGCGCGGCAATCCCTACGTGGAGCTGGCGCACTGGGTGCACGCCATCGCGCACGCGCAGGACAGCGACCTGC
ACCATATCGCGCGCGCGTTCGAGCTGGATCTCGGCGCGCTGCAGCAAGACCTGGTGCGCGCGCTCGACCAACTGCCGCGC
GGGGCGGGGGCGGTCTCGGACCTCTCCGAGCACGTGGACCACGTGGTGGAACGCGCCTGGGCGCTGGCGTCGCTGCGCTA
CGGCGCTGCGCGCATCCGCAGCGGGCACCTGCTGCTGGCGCTGCTGCGCGACCCCAGCCTGCGCGGCGTGCTGGCCGGCA
TGTCGGGGCAGTTCGCCCGCGTCGTGCCAGACCTGCTGCTGCAAGGCCTGCCCGAGATGACGCGCGGCTCGCCCGAGGCG
CGCGCCGACGCTGCCGTGGCCGATGCGCCGCCGGATGGCGGCGGCGCGGCCGGCGCGCTGGCGCGCTACGCGGTGGACCT
GACCGCCCAGGCGCGCGCCGGCCGGCTCGATCCGGTGACCGGGCGCGACGACGAAATCCGCCAGTTGATCGACGTGCTGA
TGCGGCGGCGCCAGAACAATCCCCTGCTCACCGGCGAGGCCGGCGTGGGCAAGACCGCGGTGGTCGAGGGCCTGGCCCTG
CGGCTGGCGCGCGGCGATGTGCCGGCGCCGCTGCGCGAGGTGGCGCTGTACCTGCTGGATATCGGGCTGCTGCAGGCCGG
CGCCGGCGTCAAGGGCGAGTTCGAGCAGCGCCTGCGCCAGGTCATCGACGCGGTGCAGGGCAGCGAACGCCCCATCGTGC
TGTTCATCGACGAAATCCATACCCTGGTGGGGGCCGGCGGCGCGGCGGGGACGGGCGATGCCGCCAACCTGCTCAAGCCG
GCGCTGGCGCGCGGACAGCTGCGCACCATCGGCGCCACGACCTGGGCCGAATACAAGCAGTACATCGAGAAAGACCCGGC
GCTGACGCGGCGCTTCCAGGCCATCCAGGTGCACGAGCCCGACGAGGCCGGCGCGCGGCGCATGCTGCGCGGCCTGGCCG
GCGCCCTGCAGGCGCATCATGGCGTGCTGCTGCTGGACGAGGCCGTGGAGGCCGCCGTGCGGCTGTCGCATCGCTACATC
CCGGCGCGCCAGTTGCCGGACAAGGCGGTCGCCCTGCTCGACACGGCCTGCGCGCGCGTGGCGGTCAGCCAGCAGGCCAC
GCCGGCCGCGCTGGAAGACGCGCGCCGCCGCATCGACGCGCTGGATCTCGAGCTGGAAATCGCCGCGCGCGAGGCGCGGC
TGGACGCCGGCCCGGCCGAGCGCGTGGCGGGGCTGCGCGAGCAGGGCCAGGCGGCGCGCGCCGAGGCCGACGCCCTGGCG
GCGCGCTGGGAGCGCGAAGCGGCGCTGGCCGGCCAGGTGTTCGGCCTGCGCGAACAGCTGGACGCGGCCGACGAGCAGTC
CGCGCCGGCCTTGCGCGCCGCGCTGCGCGAGGCCGCCGACGCGCTGGCGCGCAGCCAGGGCGAGGCGCCGCTGATCCACC
CGGCGGTCGATGCCGCGGCCGTGGCGGCCGTGGTGGCCGATTGGACCGGCATCCCCGTGGGCCGCATGGTGCGCGACGAA
GCGCAGGCCGTGCTGGCGCTGGCCGACACCCTGGAGCGCCGCGTCGTCGGCCAGCGCCATGCGCTGGAACTGATCGCGCG
CCGCATCCAGACCGCGCGCGCCGGTCTGACCGACCCGGGCAAGCCGGTCGGCGTGTTCCTGCTGTGCGGCCCGAGCGGCG
TGGGCAAGACCGAGACCGCGCTGGCCCTGGCCGAGGCCCTGTATGGCGGCGAGCAGAATCTCATCACCATCAACATGAGC
GAGTTCCAGGAGTCGCACACGGTGTCGACCCTGAAGGGCGCGCCGCCGGGCTATGTGGGCTACGGCGAGGGCGGCGTGCT
GACCGAAGCGGTGCGGCGCCGCCCGCACAGCGTGGTGCTGCTCGACGAGGTCGAGAAAGCCCACGCCGACGTGCACGAGA
TTTTCTTCCAGGTGTTCGACAAGGGGTGGATGGAAGACGGCGAAGGCCGTTACATCGATTTCCGCAACACGGTCATCCTG
TTGACCGCCAACGTGGGCGCGGACCTGATCGCCAGCCTGTGCGCCGACCCCGAGCTGGCGCCCGAGCCCGACGCGCTGGC
GGCGGCCCTGCGCGCGCCGCTGCGCGACGTGTTTCCCGCGGCCTTGCTGGGCCGCCTGGCGGCCGTGCCCTATCTGCCGC
TGTCGGACAGCATGCTGGCGCACATCGTGGCCTTGCAGTTCGAACGCGTCGGCCAGCGCCTGCGCGAGCGCCACGGCATG
GATTTGGAAGTCGAGCCGGCCGCCGCCGAGCTGGTGGTGGCGCGCTGCGTCGAGGTCGAATCCGGCGCGCGCATGGTCGA
CGCCATCCTGAGCCAGCGCGTCCTGCCGCAGATCGGCCGCGAATTGCTGGGCGCCTCCCTGCAGCAACGCACCTGGCGCC
GCGTGCGGGTGCGGGCGGTCGACGGCGAGTTCGCCTGCGAGTACGAGTAG