Detailed information of component protein


Summary

Component ID T6CP000071
Component protein type TssF
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (638 a.a.); Nucleotide sequence (1914 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04075
Coordinate (Strand) 844611..846524 (+)
NCBI ID WP_010925948.1
RefSeq NC_002927
Uniprot ID K0MEC6_BORPB, A0A0H3LN23_BORBR
KEGG ID bbr:BB0805, bpar:BN117_0751
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.3e-228 1..634
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-637 MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARIHLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGLARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDLPLARLGLGGREAGVASALRLRLEVCGGVSLEELDLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVRHEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCTRRAAPAAAAGPAGTRRFDLTLLLSAAAPELEGAISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVDRTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSARRHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVSAPVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGNLADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVLEQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 638 a.a.    

>T6CP000071 NC_002927:844611-846524 [Bordetella bronchiseptica RB50] [TssF]
MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARIHLKMDAEFPRFTQRLLEVVH
PHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGLARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDLPLARL
GLGGREAGVASALRLRLEVCGGVSLEELDLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVRH
EGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCTRRAAPAAAAGPAGTRRFDLTLLLSAAAPELEGA
ISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVDRTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADDY
GAYYSLRREPRLASDSARRHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVSAP
VGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGNLADPVARKHISGVRHVRVEPMH
HRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVLEQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV*

  Nucleotide sequence: 1914 bp    

>T6CP000071 NC_002927:844611-846524 [Bordetella bronchiseptica RB50] [TssF]
ATGGACGCGCGCCTGCTCGACTACTACAACCGCGAGCTGGTCTATATGCGCGAGCTGGGCGCCGAGTTCGCGCGCCAGCA
TCCCAAGGTGGCGGGGCGGCTGGGCATGCACGGCACCGAGGTGGCCGACCCGTACGTCGAGCGCCTGCTCGAAGGCTTCA
GCTTCCTGGCCGCGCGCATCCACCTGAAGATGGACGCCGAGTTTCCGCGCTTCACGCAGCGGCTGCTGGAGGTGGTGCAT
CCGCACTATCTCGCGCCCACCCCGGCGATGGCGGTGGCGCAGTTCTCGCCCAGCATGAACGAAGGCACGCTGGCCGGCGG
CTTTACCCTGCCGCGCGGCACCGTGCTGCGCGGCGGCCTGGCGCGTGGCGAACAGACGCCGTGCGAGTTCATGACCGGCC
ACGCGCTGCGGCTGTGGCCGCTGCGCGTGACGGCGGCCGAACTCACCGGCGCGCCCACCGACCTGCCGCTGGCCCGCCTG
GGCCTGGGCGGACGCGAGGCCGGCGTGGCCAGCGCGCTGCGCCTGCGGCTGGAAGTCTGCGGCGGCGTCAGCCTGGAAGA
GCTGGACCTGGATCAACTGGTGTTCTACCTCAACGGGCCGGACGCGCCCATGCAGCGCCTGCTGGAGCTGATCATGTGCC
ACACGGTCGCCGTGCTGGGCCACGACAGCGAGCGGCCCGTCTCGTGGATCAACCGGCTGCCGGCCGACGCGGTGCGCCAC
GAGGGGTTCGCCGACGACCAGGCGCTGCTGCCCACCGACACGCGGGTCTTCCAGGGCTATCGGCTGCTGCAGGAGTACTT
CGCGTTCGCGCGCCGCTATCTGTTCTTCAGCCTGAACGGCCTGAAGCAGGGCCTGTGCACGCGGCGCGCGGCGCCGGCCG
CGGCGGCTGGCCCGGCCGGCACCCGGCGTTTCGACCTGACGCTGCTGCTGTCGGCCGCAGCGCCCGAGCTCGAAGGCGCG
ATCTCGGCCGGGAACCTGGCGCTGCACTGCGCGCCCATCGTCAACCTGTTTCCGCGCCGCGCCGACCGCGTGGCGGTCAC
GCCGCGCCACCACGAGTACCACGTGGTGGTCGACCGCACCCGGCCGCTGGACTTCGAGGTCTACAGCCTGACGCGGGTGC
TCGGCCATATGTCGGCGCAGCGCCCCGAACAGGAGTTCCGTCCGTTCTACGGCTCGTTCGGCGCGGACGCCGACGATTAC
GGCGCCTATTACTCGTTGCGGCGCGAGCCGCGGCTGGCCTCGGACAGCGCGCGCCGCCATGGCACGCGCACCAGCTATAC
CGGCAGCGAAGTCTATCTGTCGCTGGTCGATCGGCACGAGGCGCCGTTTGCCGATACGCTGCGCCATCTCGGCATCGACG
CGCTGTGCACCAACCGCGACCTGGCGCTGCTGCTGCCGCTGGGCGGCGCCAGCGATTTCAGCCTGCGCGTGTCCGCCCCG
GTGGGCGCGATCAAGGTGCTGCATGGGCCGTCGCGGCCGGCCGCGGCCATGGCCGACCACGGCACGGCATGGCAATTGAT
CAGCCACCTGGGGCTGCACTACCACAGCCTGACCGACCTGGACGAGACGCGCGGCGCGCAGACGCTGCGCGAGCTGCTCA
ACCTGTACGGCAACCTGGCCGATCCGGTGGCGCGCAAGCATATCTCGGGCGTGCGCCACGTGCGGGTCGAACCCATGCAC
CACCGCCTGCCCGTGCCCGGCCCCATCGTCTACGGCCGCGGCGTGCGCATCGACCTGCAGGTCGACGAGACCGCCTTCTC
GGGCATCAGCCCCTACCTGTTCGGCGCGGTGCTGGAGCAGTTCTTCGCGCGCCACGTCTCCATCAACATGATGTCGGCGC
TCACCCTGTCCACGCCGCAGCGCGGCGCCGTGGCGAGCTGGCGGCCCCGCATGGGCCGCCGTCCCGCGGTCTAG