Detailed information of component protein


Summary

Component ID T6CP000068
Component protein type TssC
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04055
Coordinate (Strand) 841192..842694 (+)
NCBI ID WP_003808286.1
RefSeq NC_002927
Uniprot ID A0A0H3LJB1_BORBR, A0A0C6P415_BORBO
KEGG ID bbh:BN112_2639, bbr:BB0801
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.6e-135 69..371
VipB_2 PF18945.2 1e-44 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVRTLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSEQINLVMHHPDFQQLEGAWRGLHYLVTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPIGCLVGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTNTEYAAWRSLRESEDARYVGLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWANSAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCRFAHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVTEIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNEG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9845 - -


  Protein sequence: 501 a.a.    

>T6CP000068 NC_002927:841192-842694 [Bordetella bronchiseptica RB50] [TssC]
MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVRTLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSE
QINLVMHHPDFQQLEGAWRGLHYLVTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPI
GCLVGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTNTEYAAWRSLRESEDARYV
GLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWANSAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCRF
AHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVTEIEDNPGYYAAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNEG*

  Nucleotide sequence: 1503 bp    

>T6CP000068 NC_002927:841192-842694 [Bordetella bronchiseptica RB50] [TssC]
ATGACCGCAGTGGCCCGGCGCGAACGCGCGCAAGCCGAATCCAGCCTGGCGGCGGACGACCTGTCCGCCCTGCTGAAGAA
AGAGTTCAAGCCCAAGACCGAGCAGGCGCGCGAGGCCGTGGAGCACGCGGTGCGCACGCTGGCGCATCAGGCCCTGGAAA
ACAGCGGGCTGGGCCTGTCCTCGGACGCCTACCGGACCATCCAGGCCATCATCGCCGAGATCGACCGCAAGCTGTCCGAG
CAGATCAACCTGGTGATGCACCATCCCGACTTCCAGCAGCTCGAAGGCGCCTGGCGCGGACTGCACTACCTGGTCACCAA
CACCGAGACCGACGAGCTGCTGAAGATCCGCTTCATGTGCCTGTCCAAGAACGAGCTGGGGCGTACGCTCAAGCGCTACA
AGGGGGTCGGCTGGGACCAGAGCCCGATCTTCAAGCGCGTCTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAGCCCATC
GGCTGCCTGGTGGGCGACTACAGCTTCGACCACAGTCCGCCCGATGTCGAGCTGCTGGGCGAGATCGCCCGCATCAGCGC
CGCCGCCCACTGCCCCTTCATCGCCGGCGCCTCGCCCAACGTGATGCAGATGGATTCCTGGCAGGAGCTTTCCAACCCGC
GCGACCTGACCAAGATCTTCACCAATACCGAGTACGCCGCCTGGCGCAGCCTGCGCGAATCGGAAGACGCGCGCTATGTC
GGCCTGGCCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGCGCGCGCACCAATCCGGTCGATGAGTTCGATTTCGAGGA
AGAAACCGACGGCGCCAACCACGACCGGTACACCTGGGCCAATTCGGCCTACGCGATGGCCGCCAACATCAACCGTTCGT
TCAAGCTGTACGGCTGGTGCACCTCGATCCGCGGCGTGGAATCCGGCGGCGCGGTCGAGAACCTGCCATGCCACACCTTC
CCGACCGACGACGGCGGAGTGGACATGAAGTGTCCCACCGAGATCGCCATCAGCGACCGGCGCGAGGCCGAGCTGGCCAA
GAACGGCTTCATGCCGCTGGTGCATCGCAAGAACTCCGATTTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGCGTCCGC
AGGAATACCACGACGCCGACGCCAGCGCCAACGCCAAGCTGGCCGCGCGCCTGCCCTACCTGTTCGCCTGCTGCCGCTTC
GCGCACTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTTCGCGAGCGCAGCGACATGGAGCGCTGGCTCAACGA
CTGGATCATGAACTACGTCGACGGCGACCCGGCCAACTCTTCGCAGGAAACCAAGGCGCGCAAGCCGCTGGCCGCCGCCG
AGGTGCAGGTCACCGAGATCGAGGACAACCCGGGCTATTACGCCGCCAAGTTTTTCCTGCGGCCGCACTATCAGCTCGAG
GGGCTGACGGTGTCGCTGCGGCTCGTGTCCAAGCTGCCTTCGCTCAAGCAGAACGAAGGCTGA