Detailed information of component protein
Summary

External database links
Locus tag (Gene) | AYT36_RS04055 |
Coordinate (Strand) | 841192..842694 (+) |
NCBI ID | WP_003808286.1 |
RefSeq | NC_002927 |
Uniprot ID | A0A0H3LJB1_BORBR, A0A0C6P415_BORBO |
KEGG ID | bbh:BN112_2639, bbr:BB0801 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 6.6e-135 | 69..371 |
VipB_2 | PF18945.2 | 1e-44 | 381..492 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-500 | MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVRTLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSEQINLVMHHPDFQQLEGAWRGLHYLVTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPIGCLVGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTNTEYAAWRSLRESEDARYVGLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWANSAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCRFAHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVTEIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNEG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9845 | - | - |
Protein sequence: 501 a.a.
>T6CP000068 NC_002927:841192-842694 [Bordetella bronchiseptica RB50] [TssC]
MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVRTLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSE
QINLVMHHPDFQQLEGAWRGLHYLVTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPI
GCLVGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTNTEYAAWRSLRESEDARYV
GLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWANSAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCRF
AHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVTEIEDNPGYYAAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNEG*
MTAVARRERAQAESSLAADDLSALLKKEFKPKTEQAREAVEHAVRTLAHQALENSGLGLSSDAYRTIQAIIAEIDRKLSE
QINLVMHHPDFQQLEGAWRGLHYLVTNTETDELLKIRFMCLSKNELGRTLKRYKGVGWDQSPIFKRVYEEEYGQFGGEPI
GCLVGDYSFDHSPPDVELLGEIARISAAAHCPFIAGASPNVMQMDSWQELSNPRDLTKIFTNTEYAAWRSLRESEDARYV
GLAMPRFLARLPYGARTNPVDEFDFEEETDGANHDRYTWANSAYAMAANINRSFKLYGWCTSIRGVESGGAVENLPCHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQRPQEYHDADASANAKLAARLPYLFACCRF
AHYLKCIVRDKIGSFRERSDMERWLNDWIMNYVDGDPANSSQETKARKPLAAAEVQVTEIEDNPGYYAAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNEG*
Nucleotide sequence: 1503 bp
>T6CP000068 NC_002927:841192-842694 [Bordetella bronchiseptica RB50] [TssC]
ATGACCGCAGTGGCCCGGCGCGAACGCGCGCAAGCCGAATCCAGCCTGGCGGCGGACGACCTGTCCGCCCTGCTGAAGAA
AGAGTTCAAGCCCAAGACCGAGCAGGCGCGCGAGGCCGTGGAGCACGCGGTGCGCACGCTGGCGCATCAGGCCCTGGAAA
ACAGCGGGCTGGGCCTGTCCTCGGACGCCTACCGGACCATCCAGGCCATCATCGCCGAGATCGACCGCAAGCTGTCCGAG
CAGATCAACCTGGTGATGCACCATCCCGACTTCCAGCAGCTCGAAGGCGCCTGGCGCGGACTGCACTACCTGGTCACCAA
CACCGAGACCGACGAGCTGCTGAAGATCCGCTTCATGTGCCTGTCCAAGAACGAGCTGGGGCGTACGCTCAAGCGCTACA
AGGGGGTCGGCTGGGACCAGAGCCCGATCTTCAAGCGCGTCTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAGCCCATC
GGCTGCCTGGTGGGCGACTACAGCTTCGACCACAGTCCGCCCGATGTCGAGCTGCTGGGCGAGATCGCCCGCATCAGCGC
CGCCGCCCACTGCCCCTTCATCGCCGGCGCCTCGCCCAACGTGATGCAGATGGATTCCTGGCAGGAGCTTTCCAACCCGC
GCGACCTGACCAAGATCTTCACCAATACCGAGTACGCCGCCTGGCGCAGCCTGCGCGAATCGGAAGACGCGCGCTATGTC
GGCCTGGCCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGCGCGCGCACCAATCCGGTCGATGAGTTCGATTTCGAGGA
AGAAACCGACGGCGCCAACCACGACCGGTACACCTGGGCCAATTCGGCCTACGCGATGGCCGCCAACATCAACCGTTCGT
TCAAGCTGTACGGCTGGTGCACCTCGATCCGCGGCGTGGAATCCGGCGGCGCGGTCGAGAACCTGCCATGCCACACCTTC
CCGACCGACGACGGCGGAGTGGACATGAAGTGTCCCACCGAGATCGCCATCAGCGACCGGCGCGAGGCCGAGCTGGCCAA
GAACGGCTTCATGCCGCTGGTGCATCGCAAGAACTCCGATTTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGCGTCCGC
AGGAATACCACGACGCCGACGCCAGCGCCAACGCCAAGCTGGCCGCGCGCCTGCCCTACCTGTTCGCCTGCTGCCGCTTC
GCGCACTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTTCGCGAGCGCAGCGACATGGAGCGCTGGCTCAACGA
CTGGATCATGAACTACGTCGACGGCGACCCGGCCAACTCTTCGCAGGAAACCAAGGCGCGCAAGCCGCTGGCCGCCGCCG
AGGTGCAGGTCACCGAGATCGAGGACAACCCGGGCTATTACGCCGCCAAGTTTTTCCTGCGGCCGCACTATCAGCTCGAG
GGGCTGACGGTGTCGCTGCGGCTCGTGTCCAAGCTGCCTTCGCTCAAGCAGAACGAAGGCTGA
ATGACCGCAGTGGCCCGGCGCGAACGCGCGCAAGCCGAATCCAGCCTGGCGGCGGACGACCTGTCCGCCCTGCTGAAGAA
AGAGTTCAAGCCCAAGACCGAGCAGGCGCGCGAGGCCGTGGAGCACGCGGTGCGCACGCTGGCGCATCAGGCCCTGGAAA
ACAGCGGGCTGGGCCTGTCCTCGGACGCCTACCGGACCATCCAGGCCATCATCGCCGAGATCGACCGCAAGCTGTCCGAG
CAGATCAACCTGGTGATGCACCATCCCGACTTCCAGCAGCTCGAAGGCGCCTGGCGCGGACTGCACTACCTGGTCACCAA
CACCGAGACCGACGAGCTGCTGAAGATCCGCTTCATGTGCCTGTCCAAGAACGAGCTGGGGCGTACGCTCAAGCGCTACA
AGGGGGTCGGCTGGGACCAGAGCCCGATCTTCAAGCGCGTCTACGAGGAAGAGTACGGCCAGTTCGGCGGCGAGCCCATC
GGCTGCCTGGTGGGCGACTACAGCTTCGACCACAGTCCGCCCGATGTCGAGCTGCTGGGCGAGATCGCCCGCATCAGCGC
CGCCGCCCACTGCCCCTTCATCGCCGGCGCCTCGCCCAACGTGATGCAGATGGATTCCTGGCAGGAGCTTTCCAACCCGC
GCGACCTGACCAAGATCTTCACCAATACCGAGTACGCCGCCTGGCGCAGCCTGCGCGAATCGGAAGACGCGCGCTATGTC
GGCCTGGCCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGCGCGCGCACCAATCCGGTCGATGAGTTCGATTTCGAGGA
AGAAACCGACGGCGCCAACCACGACCGGTACACCTGGGCCAATTCGGCCTACGCGATGGCCGCCAACATCAACCGTTCGT
TCAAGCTGTACGGCTGGTGCACCTCGATCCGCGGCGTGGAATCCGGCGGCGCGGTCGAGAACCTGCCATGCCACACCTTC
CCGACCGACGACGGCGGAGTGGACATGAAGTGTCCCACCGAGATCGCCATCAGCGACCGGCGCGAGGCCGAGCTGGCCAA
GAACGGCTTCATGCCGCTGGTGCATCGCAAGAACTCCGATTTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGCGTCCGC
AGGAATACCACGACGCCGACGCCAGCGCCAACGCCAAGCTGGCCGCGCGCCTGCCCTACCTGTTCGCCTGCTGCCGCTTC
GCGCACTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTTCGCGAGCGCAGCGACATGGAGCGCTGGCTCAACGA
CTGGATCATGAACTACGTCGACGGCGACCCGGCCAACTCTTCGCAGGAAACCAAGGCGCGCAAGCCGCTGGCCGCCGCCG
AGGTGCAGGTCACCGAGATCGAGGACAACCCGGGCTATTACGCCGCCAAGTTTTTCCTGCGGCCGCACTATCAGCTCGAG
GGGCTGACGGTGTCGCTGCGGCTCGTGTCCAAGCTGCCTTCGCTCAAGCAGAACGAAGGCTGA