Detailed information of component protein


Summary

Component ID T6CP000065
Component protein type TssI
T6SS ID (Type) T6SS00009 experimental (Type i3)
Strain Bordetella bronchiseptica RB50
Replicon chromosome
Sequence Protein sequence (788 a.a.); Nucleotide sequence (2364 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AYT36_RS04015
Coordinate (Strand) 831107..833470 (+)
NCBI ID WP_003808272.1
RefSeq NC_002927
Uniprot ID A0A0H3LI12_BORBR
KEGG ID bbr:BB0793
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.8e-102 31..333
Phage_base_V PF04717.14 2.6e-13 388..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-787 METILAMAERIVRALTPLPPQALQFRSMHGHEGLSALYEFEVDLLAATHTLELKSLLGKPVSLEIETGGAPRYLSGQATRCALVGREGDSARQYVYRVTMRPWLWYLTQTSDSKIFQQMSVVDVLRQVLADYPFPVEYRLAGSYRRWEYCVQYQETDFAFVSRLMEHEGIYYWFRHESGRHTLVLTDDITQHDECPGAAQLPYYGPDRATVPQEQYVSQWQVAEEITPDGFATVDYDFKKPAASLDAQSSNPGAYEPGGLQVYEWLGGYTEPDQGERYSRIRLEALQAHGESVTGACNVRAFAPGYLFTLRNHPRPAENRQYLIAQAHYRIQEGGYASGAEDAVFDIDFRVLPATVPFRVARATPVPRTHGPQTATVVGQAGEEIWTDEYGRVKVHFHWDRYGKKNENSSCWVRVSSPWAGGGFGGIQLPRVGDEVIVDFIGGYPDRPIVIGRVYNASNMPPWDLPGNATQSGFLSRSKNGDRGTANALMFEDSAGAERIWLHAERDMDCEVEANESHTVDGNRTTLIGGNDTLTVRGTRTTTIDGLDTETFNAGATRTVTGEVSETTTGNETRTFNGDVTETVNGVETRTVNGDWKETITGEMTETRTGDETRTVTGAVTETITGDVTQTITGAVTQTQTGAHDITITGDQTSSITGAVSHTVTGAYTQTVTDPVTVNANTSMTVVTPSWTVSSASQQAFWTANTLRGTPARLTVVGAAADFWGVRQQVYGGINSQWSTVKIDLAAFKNGSNGFESGQAGAQIKAIGAQIKTGGAAVISRVINLFT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 788 a.a.    

>T6CP000065 NC_002927:831107-833470 [Bordetella bronchiseptica RB50] [TssI]
METILAMAERIVRALTPLPPQALQFRSMHGHEGLSALYEFEVDLLAATHTLELKSLLGKPVSLEIETGGAPRYLSGQATR
CALVGREGDSARQYVYRVTMRPWLWYLTQTSDSKIFQQMSVVDVLRQVLADYPFPVEYRLAGSYRRWEYCVQYQETDFAF
VSRLMEHEGIYYWFRHESGRHTLVLTDDITQHDECPGAAQLPYYGPDRATVPQEQYVSQWQVAEEITPDGFATVDYDFKK
PAASLDAQSSNPGAYEPGGLQVYEWLGGYTEPDQGERYSRIRLEALQAHGESVTGACNVRAFAPGYLFTLRNHPRPAENR
QYLIAQAHYRIQEGGYASGAEDAVFDIDFRVLPATVPFRVARATPVPRTHGPQTATVVGQAGEEIWTDEYGRVKVHFHWD
RYGKKNENSSCWVRVSSPWAGGGFGGIQLPRVGDEVIVDFIGGYPDRPIVIGRVYNASNMPPWDLPGNATQSGFLSRSKN
GDRGTANALMFEDSAGAERIWLHAERDMDCEVEANESHTVDGNRTTLIGGNDTLTVRGTRTTTIDGLDTETFNAGATRTV
TGEVSETTTGNETRTFNGDVTETVNGVETRTVNGDWKETITGEMTETRTGDETRTVTGAVTETITGDVTQTITGAVTQTQ
TGAHDITITGDQTSSITGAVSHTVTGAYTQTVTDPVTVNANTSMTVVTPSWTVSSASQQAFWTANTLRGTPARLTVVGAA
ADFWGVRQQVYGGINSQWSTVKIDLAAFKNGSNGFESGQAGAQIKAIGAQIKTGGAAVISRVINLFT*

  Nucleotide sequence: 2364 bp    

>T6CP000065 NC_002927:831107-833470 [Bordetella bronchiseptica RB50] [TssI]
ATGGAGACGATCCTCGCAATGGCCGAACGCATCGTACGCGCCCTGACCCCGCTGCCCCCGCAAGCCCTGCAGTTTCGCAG
CATGCACGGCCACGAAGGCCTGTCGGCGCTGTACGAATTCGAGGTGGACCTGCTGGCGGCCACCCATACGCTGGAACTGA
AATCGCTGCTGGGCAAGCCGGTTTCGCTGGAAATCGAAACAGGCGGCGCGCCGCGCTACCTGTCGGGCCAGGCGACCCGC
TGCGCCCTGGTGGGGCGCGAAGGCGACAGCGCGCGCCAGTATGTGTACCGGGTGACCATGCGGCCCTGGCTGTGGTACCT
GACGCAGACCTCGGACAGCAAGATCTTCCAGCAGATGTCGGTGGTGGACGTGCTGCGCCAGGTGCTGGCCGACTACCCGT
TTCCGGTCGAGTACCGGCTGGCCGGCAGCTACCGCCGCTGGGAATACTGCGTGCAGTACCAGGAAACCGATTTCGCCTTC
GTCAGCCGCCTGATGGAGCACGAGGGCATCTACTACTGGTTCCGCCACGAGTCGGGCAGGCACACGCTGGTGCTGACCGA
CGACATCACCCAGCACGACGAGTGTCCGGGCGCGGCGCAGCTGCCGTATTACGGCCCGGATCGCGCCACGGTGCCTCAGG
AGCAATACGTATCGCAGTGGCAGGTGGCCGAGGAGATCACGCCCGATGGCTTCGCCACCGTGGACTACGACTTCAAGAAG
CCGGCCGCCAGCCTGGACGCGCAATCGAGCAACCCGGGCGCCTACGAGCCGGGCGGGCTGCAGGTGTACGAGTGGCTGGG
CGGCTATACCGAGCCGGACCAGGGCGAGCGCTATTCGCGCATCCGCCTGGAGGCCCTGCAGGCGCACGGCGAAAGCGTGA
CCGGCGCGTGCAACGTGCGCGCCTTCGCGCCGGGTTACCTGTTCACGTTGCGCAACCATCCGCGCCCGGCCGAGAACCGC
CAATACCTGATCGCGCAGGCGCATTACCGCATCCAGGAAGGCGGCTACGCCAGCGGCGCCGAGGATGCCGTCTTCGATAT
CGACTTCCGCGTCCTGCCGGCCACGGTGCCGTTTCGCGTGGCGCGCGCCACGCCGGTGCCGCGCACGCACGGGCCGCAGA
CCGCCACGGTGGTGGGCCAGGCCGGCGAAGAGATCTGGACCGACGAGTACGGCCGCGTCAAGGTGCACTTCCACTGGGAC
CGCTACGGCAAGAAGAACGAGAACAGCTCGTGCTGGGTGCGCGTGTCCAGCCCCTGGGCCGGCGGCGGCTTCGGCGGCAT
CCAGCTGCCGCGCGTGGGCGACGAAGTGATCGTGGACTTCATCGGCGGCTATCCCGACCGGCCCATTGTCATCGGCCGCG
TCTACAACGCCAGCAACATGCCGCCCTGGGACCTGCCCGGCAACGCCACGCAAAGCGGGTTTCTCAGCCGCTCCAAGAAC
GGCGACCGGGGCACCGCCAACGCGCTGATGTTCGAGGACAGCGCGGGCGCCGAACGCATCTGGCTGCACGCCGAGCGCGA
CATGGACTGCGAGGTCGAGGCCAACGAGTCGCACACGGTCGACGGCAACCGCACCACCCTGATCGGCGGCAACGATACGC
TGACGGTGCGGGGCACGCGCACCACCACCATTGACGGGCTGGACACCGAAACCTTCAACGCCGGCGCCACGCGCACCGTC
ACCGGCGAGGTGTCGGAGACCACCACCGGCAACGAGACGCGCACCTTCAACGGCGACGTGACCGAAACCGTCAACGGCGT
GGAGACGCGCACGGTCAACGGCGACTGGAAGGAAACCATCACCGGCGAGATGACCGAAACGCGCACGGGCGACGAAACCC
GCACGGTGACCGGCGCCGTCACGGAGACCATTACCGGCGACGTGACGCAGACCATCACCGGCGCGGTCACGCAAACACAG
ACCGGCGCGCACGACATCACCATCACCGGCGACCAGACCTCCAGCATCACCGGCGCGGTGTCGCACACGGTCACCGGCGC
GTATACCCAGACGGTCACCGATCCGGTCACGGTCAACGCCAACACCAGCATGACCGTGGTCACGCCGTCGTGGACCGTCT
CGTCGGCGTCGCAGCAGGCGTTCTGGACCGCCAACACCTTGCGCGGCACGCCGGCGCGCCTGACGGTGGTCGGCGCCGCG
GCCGACTTCTGGGGCGTGCGCCAGCAGGTCTACGGCGGCATCAACTCGCAGTGGTCCACCGTGAAGATCGACCTGGCCGC
GTTCAAGAACGGCTCCAACGGCTTCGAGAGCGGTCAGGCCGGCGCGCAGATCAAGGCCATCGGCGCGCAGATCAAGACCG
GCGGGGCGGCGGTGATCTCGCGCGTCATCAATCTCTTCACCTAG