Detailed information of component protein
Summary

External database links
Locus tag (Gene) | PA1668 |
Coordinate (Strand) | 1818189..1819058 (+) |
NCBI ID | NP_250359.1 |
RefSeq | NC_002516 |
Uniprot ID | Q9I357_PSEAE |
KEGG ID | pae:PA1668 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
DotU | PF09850.11 | 3e-66 | 62..264 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-243 | MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLSEVVRLKHSTVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQGLSDQRRGLVRIVP |
Transmembrane helix | 244-266 | WWMVALFTLVCLVVMYSGFAWVL |
Inside | 267-289 | GEQRDTVLQPYQSLDAAAGQPGS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9871 | - | - |
Protein sequence: 290 a.a.
>T6CP000018 NC_002516:1818189-1819058 [Pseudomonas aeruginosa PAO1] [TssL]
MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLSEVVRLKHS
TVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFF
QLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQGLSDQRRGLVR
IVPWWMVALFTLVCLVVMYSGFAWVLGEQRDTVLQPYQSLDAAAGQPGS*
MIKEREYHEDEKTVLLDHQGQVPAQGPLTDFAEPPRFEQLEERMIYAARLRPGEAFNVSLNPLVAAASELLSEVVRLKHS
TVLENLAALKERLTSAMKLFEFRAVQDGVENSQVMAARYVLCTVVDEAVVTTPWGNESEWSKISLLSSFHNETFGGEKFF
QLLDRLSKNPVKHLPMLELMYLCLALGFEGKYRVMARGVLDLDGISDALYRQIRQLRGDVPRELSPHWQGLSDQRRGLVR
IVPWWMVALFTLVCLVVMYSGFAWVLGEQRDTVLQPYQSLDAAAGQPGS*
Nucleotide sequence: 870 bp
>T6CP000018 NC_002516:1818189-1819058 [Pseudomonas aeruginosa PAO1] [TssL]
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCCCAGGGGCC
GCTGACCGATTTCGCCGAACCGCCGCGCTTCGAACAGCTCGAGGAGCGGATGATCTACGCGGCGCGCCTGCGTCCGGGCG
AGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCGGAAGTGGTCCGGCTCAAGCACAGC
ACCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCCATGAAGCTCTTCGAATTCCGCGCCGTGCAGGA
TGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTGCTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGT
GGGGCAACGAAAGCGAATGGTCGAAGATCAGCCTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTC
CAGTTGCTCGACCGGCTGTCGAAGAACCCGGTCAAGCACCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGG
CTTCGAGGGCAAGTACCGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCC
GCCAGTTGCGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTGGTGGTGATGTATTCGGGATTCGCCTGGGTTCTCGG
CGAACAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGTTCGTAA
ATGATCAAGGAAAGGGAATACCACGAGGACGAGAAGACCGTCCTCCTCGATCACCAGGGACAGGTACCGGCCCAGGGGCC
GCTGACCGATTTCGCCGAACCGCCGCGCTTCGAACAGCTCGAGGAGCGGATGATCTACGCGGCGCGCCTGCGTCCGGGCG
AGGCCTTCAACGTCAGCCTGAACCCGCTGGTGGCGGCGGCTTCCGAACTGCTTTCGGAAGTGGTCCGGCTCAAGCACAGC
ACCGTGCTGGAGAACCTTGCGGCGCTCAAGGAGCGGTTGACCTCCGCCATGAAGCTCTTCGAATTCCGCGCCGTGCAGGA
TGGCGTGGAAAACAGCCAGGTCATGGCGGCGCGCTACGTGCTGTGCACGGTGGTCGACGAGGCGGTGGTGACCACCCCGT
GGGGCAACGAAAGCGAATGGTCGAAGATCAGCCTGCTGAGCAGCTTCCATAACGAGACCTTCGGCGGCGAGAAGTTCTTC
CAGTTGCTCGACCGGCTGTCGAAGAACCCGGTCAAGCACCTGCCGATGCTGGAGCTGATGTACCTCTGCCTGGCCCTCGG
CTTCGAGGGCAAGTACCGGGTGATGGCTCGCGGCGTGCTCGACCTGGACGGTATTTCCGATGCGCTCTACCGGCAGATCC
GCCAGTTGCGCGGCGACGTGCCGCGCGAACTGTCGCCGCACTGGCAGGGGCTCAGCGACCAGCGTCGCGGCCTGGTGCGG
ATCGTGCCCTGGTGGATGGTGGCGCTGTTCACCCTGGTCTGCCTGGTGGTGATGTATTCGGGATTCGCCTGGGTTCTCGG
CGAACAACGCGACACGGTGCTGCAGCCTTACCAGTCGCTCGATGCGGCGGCAGGACAGCCCGGTTCGTAA