Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PA1661 |
Coordinate (Strand) | 1809737..1810744 (+) |
NCBI ID | NP_250352.1 |
RefSeq | NC_002516 |
Uniprot ID | Q9I364_PSEAE |
KEGG ID | pae:PA1661 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 2.1e-88 | 20..320 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-335 | METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLRQEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRARLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGLGGEEIRKARELNWKRLMPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRHEEIREFRIGAQNACRLGWTSWLGRERADGVVTLGSKIH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9339 | - | - |
Protein sequence: 336 a.a.
>T6CP000014 NC_002516:1809737-1810744 [Pseudomonas aeruginosa PAO1] [TssG]
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLRQEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRA
RLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGL
GGEEIRKARELNWKRLMPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRHEEIREFRIGAQNACRLGWTSWLG
RERADGVVTLGSKIH*
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLRQEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGMLRA
RLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQSGASDAFSAQLFALVGL
GGEEIRKARELNWKRLMPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLDYDIRLVLRHEEIREFRIGAQNACRLGWTSWLG
RERADGVVTLGSKIH*
Nucleotide sequence: 1008 bp
>T6CP000014 NC_002516:1809737-1810744 [Pseudomonas aeruginosa PAO1] [TssG]
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGC
GGTCCTGCTGGTCATGGATCGCCTGCGCCAGGAACATCCCGGCCTGGGAGACGAGGCGCTCTACGATCAGTTGGAATTCC
AGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCG
CGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCTCTGGGCGA
CAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGC
GCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGCGAGCGATGCGTTTTCCGCCCAATTGTTCGCCCTCGTCGGATTG
GGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGATGCCCTACCTGGGCCTGCTCAGCCTGCGGGC
GCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATCGAAC
GGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGGCTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC
GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTTCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGG
TCTTGCGCCACGAGGAAATCCGTGAGTTCCGCATCGGCGCGCAGAACGCCTGCCGCCTTGGCTGGACCAGCTGGCTGGGC
CGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTGTTCCAGGC
GGTCCTGCTGGTCATGGATCGCCTGCGCCAGGAACATCCCGGCCTGGGAGACGAGGCGCTCTACGATCAGTTGGAATTCC
AGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTCGAAGAGCGCGGCATGCTGCGGGCG
CGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTGCCGGCGTTCTACAGCGAGCAGGCTCTGGGCGA
CAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTCTTCCATCACCGCCTGCATCGGCTGCTGTTGCCGATCTGGC
GCAAGTACCGCTACCGGGTGAGCTTCCAGAGCGGCGCGAGCGATGCGTTTTCCGCCCAATTGTTCGCCCTCGTCGGATTG
GGCGGGGAAGAGATCCGCAAGGCCAGGGAACTGAACTGGAAACGCCTGATGCCCTACCTGGGCCTGCTCAGCCTGCGGGC
GCACTCGGCGGCCTTGATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATCGAAC
GGCGCGTCGCGATCCTCGAAGAGCAGCGCAACCGGCTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAGTTCCTGCC
GATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTTCGCTTCACCCTGCGCGACCCGCTCGACTACGACATCCGGCTGG
TCTTGCGCCACGAGGAAATCCGTGAGTTCCGCATCGGCGCGCAGAACGCCTGCCGCCTTGGCTGGACCAGCTGGCTGGGC
CGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA