 T4SS ID | 20 |
| Strain | Agrobacterium rhizogenes plasmid pRi1724 (NC_002575) |
| Replicon | plasmid pRi1724 [Browse all T4SS(s) in this replicon] |
| Accession | NC_002575 |
| Location | 192879..212469 |
| Name | VirB |
| Function | effector translocation and conjugation |
| Classification | Type IVA; Type P |
 Experimental investigation has been performed on this T4SS. | |
T4SS components |
| Component | VirB1 | VirB2 | VirB3 | VirB4 | VirB5 | VirB6 | VirB7 | VirB8 | VirB9 |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component | VirB10 | VirB11 | VirD4 | ||||||
| Number | 1 | 1 | 1 |
The information of T4SS components from NC_002575 | ||||||
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | pRi1724_p152 (riorf151) | 187996..189348 [+], 1353 | 10954797 | hypothetical protein | ||
| 2 | pRi1724_p153 (riorf152) | 189552..192107 [+], 2556 | 10954798 | hypothetical protein | ||
| 3 | pRi1724_p154 (riorf153) | 192879..193601 [+], 723 | 10954799 | hypothetical protein | VirB1 | |
| 4 | pRi1724_p155 (riorf154) | 193601..193966 [+], 366 | 10954800 | hypothetical protein | VirB2 | |
| 5 | pRi1724_p156 (riorf155) | 193963..194289 [+], 327 | 10954801 | hypothetical protein | VirB3 | |
| 6 | pRi1724_p157 (riorf156) | 194289..196658 [+], 2370 | 10954802 | hypothetical protein | VirB4 | |
| 7 | pRi1724_p158 (riorf157) | 196675..197343 [+], 669 | 10954803 | hypothetical protein | VirB5 | |
| 8 | pRi1724_p159 (riorf158) | 197410..198297 [+], 888 | 10954804 | hypothetical protein | VirB6 | |
| 9 | pRi1724_p160 (riorf159) | 198325..198492 [+], 168 | 10954805 | hypothetical protein | VirB7 | |
| 10 | pRi1724_p161 (riorf160) | 198479..199192 [+], 714 | 10954806 | hypothetical protein | VirB8 | |
| 11 | pRi1724_p162 (riorf161) | 199189..200067 [+], 879 | 10954807 | hypothetical protein | VirB9 | |
| 12 | pRi1724_p163 (riorf162) | 200067..201197 [+], 1131 | 10954808 | hypothetical protein | VirB10 | |
| 13 | pRi1724_p164 (riorf163) | 201231..202265 [+], 1035 | 10954809 | hypothetical protein | VirB11 | |
| 14 | pRi1724_p165 (riorf164) | 202537..203226 [+], 690 | 444299592 | hypothetical protein | ||
| 15 | pRi1724_p166 (riorf165) | 204195..204800 [-], 606 | 10954811 | hypothetical protein | ||
| 16 | pRi1724_p167 (riorf166) | 204803..205498 [-], 696 | 10954812 | hypothetical protein | ||
| 17 | pRi1724_p168 (riorf167) | 205753..206199 [+], 447 | 10954813 | hypothetical protein | ||
| 18 | pRi1724_p169 (riorf168) | 206225..207571 [+], 1347 | 10954814 | hypothetical protein | ||
| 19 | pRi1724_p170 (riorf169) | 207827..210427 [+], 2601 | 10954815 | hypothetical protein | ||
| 20 | pRi1724_p171 (riorf170) | 210487..212469 [+], 1983 | 10954816 | hypothetical protein | VirD4 | |
| 21 | pRi1724_p172 (riorf171) | 212761..215085 [+], 2325 | 10954817 | hypothetical protein | ||
| 22 | pRi1724_p173 (riorf172) | 215338..216267 [+], 930 | 10954818 | hypothetical protein | ||
 Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any. |
Download FASTA format files |
| Proteins Genes |
| This system delivers both DNA and proteins into plant cell. The transferred DNA (T-DNA) region: NC_002575: 11328..26425) |
Effectors |
| GALLS, VirF, VirD2, VirD5, VirE3 |
The information of protein effectors | ||||||
| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | * | |
| 1 | pRi1724_p056 (riorf55) | 63178..68466 [-], 5289 | 10954701 | hypothetical protein | GALLS | |
| 2 | pRi1724_p147 (riorf146) | 181541..182389 [+], 849 | 10954792 | hypothetical protein | VirF | |
| 3 | pRi1724_p169 (riorf168) | 206225..207571 [+], 1347 | 10954814 | hypothetical protein | VirD2 | |
| 4 | pRi1724_p172 (riorf171) | 212761..215085 [+], 2325 | 10954817 | hypothetical protein | VirD5 | |
| 5 | pRi1724_p001 (riorf173) | 216371..132 [+], -216238 | 10954819 | hypothetical protein | VirE3 | |
T4SE derived from experimental literature.Download FASTA format files |
| Proteins Genes |
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(1) Hodges LD; Lee LY; McNett H; Gelvin SB; Ream W (2009). The Agrobacterium rhizogenes GALLS gene encodes two secreted proteins required for genetic transformation of plants. J Bacteriol. 191(1):355-64. [PudMed:18952790]
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(2) Hodges LD; Vergunst AC; Neal-McKinney J; den Dulk-Ras A; Moyer DM; Hooykaas PJ; Ream W (2006). Agrobacterium rhizogenes GALLS protein contains domains for ATP binding, nuclear localization, and type IV secretion. J Bacteriol. 188(23):8222-30. [PudMed:17012398]
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| (3) Moriguchi K; Maeda Y; Satou M; Hardayani NS; Kataoka M; Tanaka N; Yoshida K (2001). The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae. J Mol Biol. 307(3):771-84. [PudMed:11273700] |
| This literature contains experimental investigation |