StrainAgrobacterium rhizogenes plasmid pRi1724 (NC_002575)
Repliconplasmid pRi1724 [Browse all T4SS(s) in this replicon]
Functioneffector translocation and conjugation
ClassificationType IVA; Type P
experimental Experimental investigation has been performed on this T4SS.

T4SS components

The information of T4SS components from NC_002575
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pRi1724_p152 (riorf151)187996..189348 [+], 135310954797hypothetical protein 
2pRi1724_p153 (riorf152)189552..192107 [+], 255610954798hypothetical protein 
3pRi1724_p154 (riorf153)192879..193601 [+], 72310954799hypothetical protein  VirB1
4pRi1724_p155 (riorf154)193601..193966 [+], 36610954800hypothetical protein  VirB2
5pRi1724_p156 (riorf155)193963..194289 [+], 32710954801hypothetical protein  VirB3
6pRi1724_p157 (riorf156)194289..196658 [+], 237010954802hypothetical protein  VirB4
7pRi1724_p158 (riorf157)196675..197343 [+], 66910954803hypothetical protein  VirB5
8pRi1724_p159 (riorf158)197410..198297 [+], 88810954804hypothetical protein  VirB6
9pRi1724_p160 (riorf159)198325..198492 [+], 16810954805hypothetical protein  VirB7
10pRi1724_p161 (riorf160)198479..199192 [+], 71410954806hypothetical protein  VirB8
11pRi1724_p162 (riorf161)199189..200067 [+], 87910954807hypothetical protein  VirB9
12pRi1724_p163 (riorf162)200067..201197 [+], 113110954808hypothetical protein  VirB10
13pRi1724_p164 (riorf163)201231..202265 [+], 103510954809hypothetical protein  VirB11
14pRi1724_p165 (riorf164)202537..203226 [+], 690444299592hypothetical protein 
15pRi1724_p166 (riorf165)204195..204800 [-], 60610954811hypothetical protein 
16pRi1724_p167 (riorf166)204803..205498 [-], 69610954812hypothetical protein 
17pRi1724_p168 (riorf167)205753..206199 [+], 44710954813hypothetical protein 
18pRi1724_p169 (riorf168)206225..207571 [+], 134710954814hypothetical protein 
19pRi1724_p170 (riorf169)207827..210427 [+], 260110954815hypothetical protein 
20pRi1724_p171 (riorf170)210487..212469 [+], 198310954816hypothetical protein  VirD4
21pRi1724_p172 (riorf171)212761..215085 [+], 232510954817hypothetical protein 
22pRi1724_p173 (riorf172)215338..216267 [+], 93010954818hypothetical protein 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This system delivers both DNA and proteins into plant cell. The transferred DNA (T-DNA) region: NC_002575: 11328..26425)

GALLS, VirF, VirD2, VirD5, VirE3

The information of protein effectors
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  *
1pRi1724_p056 (riorf55)63178..68466 [-], 528910954701hypothetical proteinexperimental  GALLS
2pRi1724_p147 (riorf146)181541..182389 [+], 84910954792hypothetical proteinexperimental  VirF
3pRi1724_p169 (riorf168)206225..207571 [+], 134710954814hypothetical proteinexperimental  VirD2
4pRi1724_p172 (riorf171)212761..215085 [+], 232510954817hypothetical proteinexperimental  VirD5
5pRi1724_p001 (riorf173)216371..132 [+], -21623810954819hypothetical proteinexperimental  VirE3
experimental T4SE derived from experimental literature.

Download FASTA format files
Proteins        Genes
(1) Hodges LD; Lee LY; McNett H; Gelvin SB; Ream W (2009). The Agrobacterium rhizogenes GALLS gene encodes two secreted proteins required for genetic transformation of plants. J Bacteriol. 191(1):355-64. [PudMed:18952790] experimental
(2) Hodges LD; Vergunst AC; Neal-McKinney J; den Dulk-Ras A; Moyer DM; Hooykaas PJ; Ream W (2006). Agrobacterium rhizogenes GALLS protein contains domains for ATP binding, nuclear localization, and type IV secretion. J Bacteriol. 188(23):8222-30. [PudMed:17012398] experimental
(3) Moriguchi K; Maeda Y; Satou M; Hardayani NS; Kataoka M; Tanaka N; Yoshida K (2001). The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae. J Mol Biol. 307(3):771-84. [PudMed:11273700]
experimental This literature contains experimental investigation