| Effector Protein ID: 10954817 |
 T4SS name [ID] | VirB [20] |
| Gene symbol | riorf171 |
| Locus tag | pRi1724_p172 |
| Strain | Agrobacterium rhizogenes plasmid pRi1724 (NC_002575) |
| Replicon | plasmid pRi1724 [GenBank: NC_002575] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 212761..215085 [+] |
| Product | hypothetical protein |
| Effector type | Protein |
| Descripton | VirD5 |
| T4CP requirement | T4CP Depedent |
| Target/Effection | VirD5 interacts with and stabilizes VirF in plants. |
| UniProt ID | Q9F584 |
| KEGG ID | NA |
| PDB ID | NA |
| Domain hit(s) vs Pfam | Agro_virD5 [PF04730], Evalue: 0, Aligned region: 2..774 |
| Protein Sequence: 774 a.a. [Download] |
| >gi|10954817|ref|NP_066752.1| riorf171 [Agrobacterium rhizogenes] MRLGAAERSAYETWDRADRPSWKDLILSARLNAIDSFAWNVDVGESTSSTFVYEGVPLAEGERRAYEEWV EPGQPSWQQLVVNARIEELNTSAAIPNECSPLQEEFRSEAPKRKRTSSIGQKNGFPEPFEFDGMRLGSPE REAYENWSKPQPPSWKDLIVDARLHAIDTSTWLNESNDTSVFEYEGVPLGEGERLAYEKWLEPAQPGWED LVVDARVAELHQSAPTWCEHQPGNDVSSNESGRISGVPINAEQVSRAFFVYDGVALGAAERAAHDRWNRP DRPTWEDLIIVARQAAIEGDAVSNGMIGKTSSSVFLYEGMLLGDAERQAYGRWRQLAQPRWQNLVVNARL AELDPAAWIPDEHDPSEHGGATGLLSQASTTNKSRLSLGDQPEARSPSLAREPAQQPTHVQNLTCAQLEA RRALYFGPSGRDADQTASIADSNRLDEVSKVKRLGAKSRRGAKATAYDVISSAERLSSHEGCLTVQSTQP EKAACSRSDNIGTYGSRKNERARLATETGKYESEHIFGFKVVHDTLRSTKEGRRLERPMPAYLECKELHR QHVGTGRGRTRLVGRGWPDDASYRSDQRATLSDPVASTEGATASNGYQLNQLGYAHQLANDGLQSETPDG VIMPLQVATTSYNYTVSRDPVLSPPSKEQAPELLHLGPRGQTEAVLARETALTGRWPTREREQQVYREFL ALYDVKKDLEAKTLGLRKKKAALVSALNRTAASIGTSPLKAQSSSAEVEKATHEFDERRVYDPRDRGRDK ALQR |
| - |
| Nucleotide Sequence: 2325 bp [Download] |
| >gi|10954646|ref|NC_002575.1|:212761-215085 Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence ATGAGACTGGGCGCAGCCGAGCGGTCCGCGTACGAGACATGGGATAGAGCGGACCGGCCGAGTTGGAAAG ACCTGATACTGAGCGCTCGCCTGAATGCGATTGACAGTTTCGCTTGGAATGTCGATGTCGGAGAAAGTAC CTCTTCAACTTTTGTTTATGAGGGTGTTCCTCTGGCGGAAGGGGAACGGCGTGCCTACGAGGAATGGGTG GAGCCGGGACAGCCCAGTTGGCAACAACTCGTTGTGAACGCGCGTATTGAAGAGCTAAACACCTCTGCTG CAATTCCGAATGAGTGTAGTCCCCTTCAAGAGGAATTCCGATCGGAGGCACCTAAGCGTAAGCGGACAAG CTCCATTGGTCAAAAGAACGGTTTCCCTGAACCATTCGAATTTGATGGGATGAGACTCGGCTCGCCTGAG CGCGAAGCATATGAGAATTGGAGCAAACCGCAACCGCCATCCTGGAAAGACCTGATAGTTGACGCCCGTC TTCACGCAATCGACACCTCCACCTGGCTCAACGAATCAAATGACACCTCGGTCTTCGAGTACGAAGGCGT CCCGCTTGGGGAGGGGGAACGGCTAGCATATGAAAAATGGCTCGAGCCCGCGCAACCAGGATGGGAAGAC CTGGTTGTGGACGCACGCGTTGCGGAATTGCACCAGTCTGCTCCGACGTGGTGCGAACACCAACCAGGCA ACGACGTTTCTTCCAACGAGTCCGGGCGCATCTCGGGCGTCCCAATTAACGCCGAGCAGGTGTCGCGTGC GTTCTTTGTGTACGATGGAGTGGCGCTCGGAGCAGCCGAGCGCGCTGCGCATGATCGCTGGAACAGGCCG GACCGGCCCACCTGGGAAGATCTTATCATAGTCGCGCGCCAAGCTGCTATCGAAGGCGATGCCGTTTCGA ATGGGATGATCGGGAAGACATCTTCCTCAGTCTTTTTATACGAGGGAATGTTGCTTGGGGATGCGGAGCG TCAGGCGTACGGACGGTGGAGGCAGCTAGCCCAGCCGCGGTGGCAAAATCTGGTGGTGAACGCGCGCCTG GCAGAGCTCGACCCGGCGGCCTGGATTCCCGATGAACATGATCCGTCTGAGCATGGCGGGGCGACTGGTC TTCTGTCGCAAGCAAGCACGACCAATAAGTCCCGCCTCAGTTTAGGTGATCAACCGGAAGCGCGCTCGCC TAGTCTCGCACGTGAGCCAGCACAACAGCCGACTCACGTGCAAAACCTGACATGCGCACAATTGGAAGCA AGACGTGCTCTATATTTCGGGCCCTCTGGGAGGGATGCAGACCAAACCGCCAGCATCGCCGACAGTAATC GCCTTGACGAGGTAAGCAAAGTTAAACGGCTGGGTGCCAAGAGCCGTCGAGGCGCTAAAGCAACGGCCTA TGACGTAATTTCAAGTGCGGAAAGACTGTCGTCTCACGAGGGTTGTTTGACGGTTCAGTCCACTCAGCCA GAAAAAGCCGCTTGCTCGAGAAGCGACAATATCGGCACTTATGGAAGTCGAAAAAACGAACGAGCTCGGC TTGCGACCGAGACCGGGAAATACGAGTCGGAGCATATTTTCGGGTTCAAGGTTGTCCACGATACCCTGCG CTCGACCAAAGAGGGCCGGCGGCTGGAAAGGCCTATGCCCGCCTATCTCGAATGCAAGGAACTTCATCGA CAACATGTTGGTACGGGAAGGGGGCGGACCCGACTGGTGGGGCGCGGCTGGCCAGATGACGCAAGTTACC GCTCGGATCAAAGGGCAACTCTATCGGACCCTGTTGCGTCCACGGAAGGTGCAACGGCGTCAAACGGGTA TCAATTAAACCAGCTAGGCTACGCACACCAGCTCGCTAACGACGGGCTGCAGAGCGAAACGCCAGATGGG GTTATCATGCCGCTTCAGGTCGCGACTACTAGCTACAACTATACGGTAAGCCGCGATCCGGTACTTTCTC CGCCCAGTAAAGAGCAAGCTCCGGAATTGTTGCACCTTGGGCCACGTGGCCAGACAGAAGCTGTACTCGC TCGCGAAACAGCATTGACAGGAAGATGGCCAACACGCGAGCGTGAGCAGCAAGTCTATCGAGAGTTTTTA GCCCTTTATGACGTCAAGAAGGACCTGGAGGCCAAGACACTTGGGTTGCGGAAGAAAAAAGCTGCGCTTG TTTCCGCGTTGAACCGGACTGCCGCCTCAATAGGCACTTCACCCTTGAAAGCCCAATCGTCGAGCGCAGA AGTTGAAAAAGCAACTCACGAGTTTGATGAACGACGGGTTTATGATCCGCGCGATCGCGGTCGGGACAAA GCATTACAACGGTGA |
| Reference |
(1) Hodges LD; Cuperus J; Ream W (2004). Agrobacterium rhizogenes GALLS protein substitutes for Agrobacterium tumefaciens single-stranded DNA-binding protein VirE2. J Bacteriol. 186(10):3065-77. [PudMed:15126468] 
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| experimental literature |