- T4EffPred, A web server for T4SS effector prediction
- AtlasT4SS, A curated database for type IV secretion systems
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| Bioinformatics tools used by SecReT4 |
- PostgreSQL, an open source relational database management system
- WU-BLAST, the Washington University improved version of BLAST
- MUSCLE, protein multiple sequence alignment
- Jalview, a multiple alignment editor written in Java
- CGview, generate circular genome maps
HMMER, sequence analysis using profile hidden Markov models
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| Public database, to which SecReT4 has a hyperlink path |
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| Other tools or servers of interest |
- NCBI Microbial Genomes
- VFDB, Virulence Factor database
- Effective, a database of predicted secreted bacterial proteins
- T3DB, an integrated database for bacterial Type III Secretion System
- T3SEdb, data warehousing of virulence effectors secreted by the bacterial Type III Secretion System
- SSPred, a prediction server based on SVM for the identification and classification of proteins involved in bacterial secretion systems.
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