Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   ABD409_RS07610 Genome accession   NZ_CP155741
Coordinates   1508579..1508758 (-) Length   59 a.a.
NCBI ID   WP_002988813.1    Uniprot ID   Q5YAB1
Organism   Streptococcus pyogenes strain 400/03     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503579..1513758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS07590 (ABD409_07565) - 1505859..1506161 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  ABD409_RS07595 (ABD409_07570) rnpM 1506154..1506450 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  ABD409_RS07600 (ABD409_07575) nusA 1506466..1507623 (-) 1158 WP_023611711.1 transcription termination factor NusA -
  ABD409_RS07605 (ABD409_07580) rimP 1507798..1508334 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  ABD409_RS07610 (ABD409_07585) prx 1508579..1508758 (-) 180 WP_002988813.1 hypothetical protein Regulator
  ABD409_RS07615 (ABD409_07590) sda1 1508997..1510169 (+) 1173 WP_002988811.1 streptodornase Sda1 -
  ABD409_RS07620 (ABD409_07595) - 1510285..1511481 (-) 1197 WP_002988807.1 glucosaminidase domain-containing protein -
  ABD409_RS07625 (ABD409_07600) - 1511592..1511777 (-) 186 WP_021341107.1 holin -
  ABD409_RS07630 (ABD409_07605) - 1511774..1512073 (-) 300 WP_002988799.1 hypothetical protein -
  ABD409_RS07635 (ABD409_07610) - 1512084..1512704 (-) 621 WP_002988797.1 hypothetical protein -
  ABD409_RS07640 (ABD409_07615) - 1512707..1512868 (-) 162 WP_002988795.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6798.70 Da        Isoelectric Point: 4.2542

>NTDB_id=999273 ABD409_RS07610 WP_002988813.1 1508579..1508758(-) (prx) [Streptococcus pyogenes strain 400/03]
MLTYDEFKQAIDHGYITGDTVAIVRKNGQIFDYVLPHEKVKNGEVVTDEKVEEVLMELE

Nucleotide


Download         Length: 180 bp        

>NTDB_id=999273 ABD409_RS07610 WP_002988813.1 1508579..1508758(-) (prx) [Streptococcus pyogenes strain 400/03]
ATGCTAACATACGACGAATTTAAGCAAGCAATCGACCATGGGTATATCACAGGAGACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATCTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACAGATGAAAAAGTGGAAGAAG
TGTTGATGGAATTGGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

91.379

98.305

0.898
  prx Streptococcus pyogenes MGAS315

87.931

98.305

0.864
  prx Streptococcus pyogenes MGAS315

84.746

100

0.847
  prx Streptococcus pyogenes MGAS315

74.576

100

0.746
  prx Streptococcus pyogenes MGAS315

86.047

72.881

0.627
  prx Streptococcus pyogenes MGAS315

90.244

69.492

0.627
  prx Streptococcus pyogenes MGAS315

80.952

71.186

0.576

Multiple sequence alignment