Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ABD412_RS09035 Genome accession   NZ_CP155737
Coordinates   1795039..1795590 (-) Length   183 a.a.
NCBI ID   WP_369303556.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 9606/11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790039..1800590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD412_RS09010 (ABD412_08980) - 1791405..1792250 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  ABD412_RS09015 (ABD412_08985) - 1792315..1792875 (-) 561 WP_002988142.1 TIGR01440 family protein -
  ABD412_RS09020 (ABD412_08990) - 1792889..1793359 (-) 471 WP_002988139.1 ECF transporter S component -
  ABD412_RS09025 (ABD412_08995) - 1793349..1794113 (-) 765 WP_002982821.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABD412_RS09030 (ABD412_09000) truA 1794103..1794852 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  ABD412_RS09035 (ABD412_09005) comX/sigX/comX2/sigX2 1795039..1795590 (-) 552 WP_369303556.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22298.17 Da        Isoelectric Point: 10.1972

>NTDB_id=999044 ABD412_RS09035 WP_369303556.1 1795039..1795590(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 9606/11]
MSCCFFVVLFILGMVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLKRYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=999044 ABD412_RS09035 WP_369303556.1 1795039..1795590(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 9606/11]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATGGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAAAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

98.907

100

0.989
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

98.907

100

0.989
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

98.361

100

0.984
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

98.361

100

0.984
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

98.361

100

0.984
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

98.361

100

0.984
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.667

81.967

0.399
  comX Streptococcus sobrinus strain NIDR 6715-7

45.455

84.153

0.383
  comX/sigX Streptococcus mutans UA159

44.444

83.607

0.372

Multiple sequence alignment