Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABEG07_RS08630 Genome accession   NZ_CP155636
Coordinates   1787832..1788704 (-) Length   290 a.a.
NCBI ID   WP_012990865.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SQ078     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1782832..1793704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG07_RS08615 (ABEG07_08615) xerC 1783207..1784100 (-) 894 WP_002459293.1 tyrosine recombinase XerC -
  ABEG07_RS08620 (ABEG07_08620) trmFO 1784232..1785539 (-) 1308 WP_070817292.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABEG07_RS08625 (ABEG07_08625) topA 1785591..1787666 (-) 2076 WP_176746553.1 type I DNA topoisomerase -
  ABEG07_RS08630 (ABEG07_08630) dprA 1787832..1788704 (-) 873 WP_012990865.1 DNA-processing protein DprA Machinery gene
  ABEG07_RS08635 (ABEG07_08635) - 1789363..1790598 (-) 1236 WP_002478287.1 aminoacyltransferase -
  ABEG07_RS08640 (ABEG07_08640) - 1790612..1791760 (-) 1149 WP_346842636.1 LysM peptidoglycan-binding domain-containing protein -
  ABEG07_RS08645 (ABEG07_08645) sucD 1791957..1792865 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33042.89 Da        Isoelectric Point: 8.3798

>NTDB_id=998217 ABEG07_RS08630 WP_012990865.1 1787832..1788704(-) (dprA) [Staphylococcus lugdunensis strain SQ078]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEYDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLAHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=998217 ABEG07_RS08630 WP_012990865.1 1787832..1788704(-) (dprA) [Staphylococcus lugdunensis strain SQ078]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGCATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGTATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCTAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATTGCAGTACTTGGATTTGGACATCTCGCACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCACATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.136

100

0.49
  dprA Staphylococcus aureus MW2

48.136

100

0.49

Multiple sequence alignment