Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   EL020_RS03710 Genome accession   NZ_LR134203
Coordinates   706761..707111 (+) Length   116 a.a.
NCBI ID   WP_020915993.1    Uniprot ID   A0AB33AJH2
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 701761..712111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS03675 (NCTC11436_00764) - 703065..703433 (+) 369 WP_126402407.1 DUF1033 family protein -
  EL020_RS03680 (NCTC11436_00765) comGA 703505..704446 (+) 942 WP_020915987.1 competence type IV pilus ATPase ComGA Machinery gene
  EL020_RS03685 (NCTC11436_00766) comGB 704370..705413 (+) 1044 WP_231997012.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL020_RS03690 (NCTC11436_00767) comGC 705413..705706 (+) 294 WP_020915989.1 competence type IV pilus major pilin ComGC Machinery gene
  EL020_RS03695 (NCTC11436_00768) comGD 705690..706121 (+) 432 WP_020915990.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL020_RS03700 (NCTC11436_00769) comGE 706075..706368 (+) 294 WP_020915991.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL020_RS03705 (NCTC11436_00770) comGF 706352..706789 (+) 438 WP_043894883.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL020_RS03710 (NCTC11436_00771) comGG 706761..707111 (+) 351 WP_020915993.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL020_RS03715 (NCTC11436_00772) comGH 707165..708121 (+) 957 WP_020915994.1 class I SAM-dependent methyltransferase Machinery gene
  EL020_RS03720 (NCTC11436_00773) - 708175..709374 (+) 1200 WP_126402408.1 acetate kinase -
  EL020_RS03725 (NCTC11436_00774) - 709534..709731 (+) 198 WP_020915996.1 helix-turn-helix transcriptional regulator -
  EL020_RS03730 (NCTC11436_00775) - 709721..709948 (+) 228 WP_231997018.1 hypothetical protein -
  EL020_RS03735 (NCTC11436_00776) - 709949..710404 (+) 456 WP_231853254.1 ABC transporter permease -
  EL020_RS03740 (NCTC11436_00777) - 710419..711054 (+) 636 WP_058833293.1 CPBP family intramembrane glutamic endopeptidase -
  EL020_RS03745 (NCTC11436_00778) proC 711091..711861 (-) 771 WP_126402409.1 pyrroline-5-carboxylate reductase -

Sequence


Protein


Download         Length: 116 a.a.        Molecular weight: 13418.58 Da        Isoelectric Point: 9.1312

>NTDB_id=998220 EL020_RS03710 WP_020915993.1 706761..707111(+) (comGG) [Streptococcus lutetiensis strain NCTC11436]
MFTLLRRQVKAGILLYALLMAAIFALLLQFYLGRVVASERQHQAQIKSAQAYLMAEMSKDLADEESGQYQFDKGTVSYHY
KDKLLVETVTLGSKEEFQYTFYLPKKEKKALEKESH

Nucleotide


Download         Length: 351 bp        

>NTDB_id=998220 EL020_RS03710 WP_020915993.1 706761..707111(+) (comGG) [Streptococcus lutetiensis strain NCTC11436]
TTGTTTACACTTTTAAGACGACAAGTTAAAGCAGGAATTTTATTATATGCCTTACTGATGGCGGCTATCTTTGCACTGCT
TTTGCAATTTTATTTGGGGCGCGTGGTTGCAAGTGAACGTCAACATCAGGCACAGATAAAATCAGCCCAAGCTTACCTGA
TGGCAGAAATGAGTAAAGACTTGGCTGATGAGGAATCAGGACAATACCAATTTGATAAAGGAACAGTAAGTTATCACTAC
AAAGACAAACTCTTAGTAGAGACCGTTACGTTAGGTAGCAAGGAGGAGTTTCAATACACGTTTTACCTTCCTAAGAAAGA
AAAAAAAGCACTTGAAAAAGAAAGTCACTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AB33AJH2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

47.619

90.517

0.431

  comGG Streptococcus mutans UA159

47.619

90.517

0.431

  comGG/cglG Streptococcus mitis NCTC 12261

45.455

85.345

0.388

  comGG/cglG Streptococcus pneumoniae Rx1

43.434

85.345

0.371

  comGG/cglG Streptococcus pneumoniae D39

43.434

85.345

0.371

  comGG/cglG Streptococcus pneumoniae R6

43.434

85.345

0.371

  comGG/cglG Streptococcus pneumoniae TIGR4

43.434

85.345

0.371