Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ABEG07_RS09575 Genome accession   NZ_CP155636
Coordinates   1987264..1987833 (-) Length   189 a.a.
NCBI ID   WP_002459481.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SQ078     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1982264..1992833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG07_RS09530 (ABEG07_09530) - 1982330..1983268 (+) 939 WP_002478398.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABEG07_RS09535 (ABEG07_09535) - 1983503..1983607 (+) 105 WP_002478399.1 SAR1012 family small protein -
  ABEG07_RS09540 (ABEG07_09540) - 1983745..1983930 (+) 186 WP_002459476.1 hypothetical protein -
  ABEG07_RS09545 (ABEG07_09545) - 1984326..1984727 (-) 402 WP_002478400.1 DUF1433 domain-containing protein -
  ABEG07_RS09550 (ABEG07_09550) - 1984754..1985245 (+) 492 WP_002459478.1 hypothetical protein -
  ABEG07_RS09555 (ABEG07_09555) - 1985962..1986156 (-) 195 WP_002459479.1 hypothetical protein -
  ABEG07_RS09560 (ABEG07_09560) - 1986158..1986859 (-) 702 Protein_1852 minor capsid protein -
  ABEG07_RS09575 (ABEG07_09575) comK/comK1 1987264..1987833 (-) 570 WP_002459481.1 competence protein ComK Regulator
  ABEG07_RS09580 (ABEG07_09580) - 1988052..1988270 (+) 219 WP_002478404.1 IDEAL domain-containing protein -
  ABEG07_RS09585 (ABEG07_09585) - 1988346..1989332 (-) 987 WP_002459483.1 lipoate--protein ligase -
  ABEG07_RS09590 (ABEG07_09590) - 1989532..1989717 (+) 186 WP_002459484.1 YkvS family protein -
  ABEG07_RS09595 (ABEG07_09595) - 1989724..1990326 (+) 603 WP_002459485.1 CPBP family glutamic-type intramembrane protease -
  ABEG07_RS09600 (ABEG07_09600) - 1990429..1991943 (-) 1515 WP_002478405.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22480.96 Da        Isoelectric Point: 9.8301

>NTDB_id=998218 ABEG07_RS09575 WP_002459481.1 1987264..1987833(-) (comK/comK1) [Staphylococcus lugdunensis strain SQ078]
MDKKTIYVIRKGDMVIRPIIDDYGHAQGTEIIKFDTTKERSPFKTQKIIERSCKFYGNNYLSKKAETSRIARINSKPPIL
LTPLFPTYFFPTHSDRQEENIWINMHFIVDIKPLKHRKSKVIFANHETLIINVSFHSMWHQYINAIFYYYMVDKQSKMRS
NNPDMPIDYEKSSLNIYEALSQYSLLDNK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=998218 ABEG07_RS09575 WP_002459481.1 1987264..1987833(-) (comK/comK1) [Staphylococcus lugdunensis strain SQ078]
ATGGACAAAAAAACCATATATGTTATACGTAAAGGAGATATGGTCATACGACCCATTATCGACGATTATGGACATGCTCA
AGGAACAGAAATCATTAAATTTGACACCACAAAAGAAAGAAGCCCATTTAAAACGCAGAAAATTATAGAAAGATCTTGCA
AGTTTTACGGAAATAATTATCTTAGCAAAAAAGCAGAAACAAGTAGAATCGCTCGTATTAATAGCAAACCTCCGATATTA
CTCACTCCCTTATTCCCAACTTATTTTTTTCCAACACATTCTGACAGACAAGAAGAAAACATATGGATTAATATGCATTT
TATTGTAGATATTAAGCCTTTAAAGCACAGAAAAAGTAAAGTCATTTTTGCTAATCATGAAACACTTATCATAAATGTGT
CATTTCATAGTATGTGGCATCAATATATAAATGCCATTTTTTATTACTACATGGTAGATAAACAATCTAAAATGCGTTCA
AATAACCCCGATATGCCTATTGATTATGAAAAATCCTCACTAAATATTTACGAAGCACTTTCCCAATATTCTCTATTAGA
TAATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

69.312

100

0.693
  comK/comK1 Staphylococcus aureus N315

69.312

100

0.693

Multiple sequence alignment