Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABDZ23_RS16885 Genome accession   NZ_CP155621
Coordinates   3731973..3734051 (+) Length   692 a.a.
NCBI ID   WP_247269348.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3726973..3739051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS16865 (ABDZ23_16865) pilM 3729185..3730249 (+) 1065 WP_096794691.1 pilus assembly protein PilM Machinery gene
  ABDZ23_RS16870 (ABDZ23_16870) - 3730249..3730815 (+) 567 WP_027611312.1 PilN domain-containing protein -
  ABDZ23_RS16875 (ABDZ23_16875) pilO 3730812..3731435 (+) 624 WP_247269350.1 type 4a pilus biogenesis protein PilO -
  ABDZ23_RS16880 (ABDZ23_16880) - 3731432..3731959 (+) 528 WP_247269349.1 pilus assembly protein PilP -
  ABDZ23_RS16885 (ABDZ23_16885) pilQ 3731973..3734051 (+) 2079 WP_247269348.1 type IV pilus secretin PilQ Machinery gene
  ABDZ23_RS16890 (ABDZ23_16890) aroK 3734056..3734574 (+) 519 WP_027611316.1 shikimate kinase AroK -
  ABDZ23_RS16895 (ABDZ23_16895) aroB 3734726..3735826 (+) 1101 WP_210556778.1 3-dehydroquinate synthase -
  ABDZ23_RS16900 (ABDZ23_16900) - 3735837..3737426 (+) 1590 WP_247269347.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75112.40 Da        Isoelectric Point: 5.5724

>NTDB_id=998100 ABDZ23_RS16885 WP_247269348.1 3731973..3734051(+) (pilQ) [Pseudomonas koreensis strain BM06]
MNRIFSTLGFSLWIALLSPMVQAASLKTLDVAALPGDRIELKLSFDSPPPQPKGYTTESPARIALDLPGVASQLTSKTRD
LGSGNARTATVVEANDRTRLIINLTQLTPYTSRVEGNNLFVVVGQGAKPAAPRPATAAPRPVAAPAPAKAYTPVAKTIRG
VDFQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPDRLRVRLDVKDFATPVQFVNAAATGDRAVITVEPSGT
FDYSTYQTDNKLTVSIRPMTVDDLQKRNADRNSYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
IDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GTSTTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=998100 ABDZ23_RS16885 WP_247269348.1 3731973..3734051(+) (pilQ) [Pseudomonas koreensis strain BM06]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCACCGATGGTTCAGGCGGCCAGCCTCAA
GACGCTGGATGTCGCGGCGTTACCGGGTGATCGCATCGAGTTGAAGCTGTCGTTCGACAGCCCGCCACCGCAACCCAAGG
GCTACACCACCGAATCGCCGGCGCGAATCGCCCTGGATCTGCCGGGTGTCGCCAGCCAACTGACGAGCAAGACCCGCGAT
CTGGGCAGCGGTAACGCGCGAACCGCCACAGTGGTGGAAGCCAACGACCGCACGCGCCTGATCATCAATCTGACGCAACT
GACGCCCTACACCTCACGGGTCGAGGGCAACAATCTGTTCGTGGTGGTCGGGCAGGGCGCCAAGCCTGCTGCACCACGGC
CAGCCACTGCTGCACCACGACCGGTCGCGGCTCCAGCGCCGGCGAAGGCTTATACCCCCGTCGCCAAAACCATTCGTGGC
GTCGACTTCCAGCGTGGCACCGCGGGAGAGGGCAACGTCGTCATCGACCTGTCGGATCCGACCATCGCCCCGGACATCCA
GGAGCATGACGGAAAGATCATCCTCAGCTTCGCCCGCACGCAGTTGCCCGACAGGCTGCGGGTGCGCCTCGACGTCAAGG
ACTTCGCCACGCCGGTGCAGTTCGTCAACGCTGCCGCCACCGGTGATCGTGCGGTCATCACCGTCGAACCCAGCGGTACG
TTCGACTATTCCACCTACCAGACCGACAACAAACTGACCGTCAGTATTCGCCCGATGACGGTCGATGACCTGCAAAAGCG
CAACGCTGACCGCAACAGCTACAGCGGCGAAAAGCTTTCGCTGAATTTCCAGGACATCGACGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTTACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGGATCACCCTGCGTCTGCAGAACGTG
CCGTGGGATCAGGCGCTTGATCTTGTGTTGAAAACCAAAGGGCTGGACAAGCGCAAGATCGGCAACGTGTTGCTGGTGGC
GCCGGCCGACGAAATCGCCGCCCGTGAACGCCAGGAGCTGGAGTCGCAGAAACAGATCGCCGAACTGGCGCCGCTGCGCC
GCGAACTGCTGCAAGTGAATTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGCGCCGAGGCGAAA
ATCGACGAGCGTGGCTCGATTACCGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGA
ACTGCGGCGGATCGTGGCGCAACTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCG
ATTACGACAAGAGTCTGGGCGTGCGCTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAACACCTCGGGGGTCAGTAAC
GGCACCTCGACCACCATTGGCACACCGGGCAGCACCAGTACCAACTCGCCGTTCGTCGACATGGGCACGGTGGGTAATAC
CTCGGGGATCGGCATCGCCTTCATTACCGACAATGTGCTGCTCGATCTTGAGCTGACCGCCATGGAGAAGACCGGCAACG
GTGAGATCGTCTCGCAGCCCAAAGTGGTCACCTCCGACAAAGAGACGGCGAAGATCCTCAAGGGCACCGAGATTCCGTAT
CAGGAAGCCAGCTCCAGCGGTGCGACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
CCCCGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGC
CGATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATCGGGGGCGTTTTCTCAAAT
ACTCAAAGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.007

100

0.754
  comQ Acinetobacter baylyi ADP1

40.981

100

0.41
  pilQ Acinetobacter baumannii strain A118

37.534

100

0.405
  pilQ Acinetobacter baumannii D1279779

37.534

100

0.405
  pilQ Legionella pneumophila strain ERS1305867

37.741

97.254

0.367
  pilQ Legionella pneumophila strain Lp02

37.741

97.254

0.367

Multiple sequence alignment