Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABDX87_RS16020 Genome accession   NZ_CP155619
Coordinates   3587293..3589383 (+) Length   696 a.a.
NCBI ID   WP_346828763.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3582293..3594383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS16000 (ABDX87_16000) pilM 3584441..3585505 (+) 1065 WP_074751550.1 pilus assembly protein PilM Machinery gene
  ABDX87_RS16005 (ABDX87_16005) - 3585505..3586071 (+) 567 WP_346828760.1 PilN domain-containing protein -
  ABDX87_RS16010 (ABDX87_16010) pilO 3586068..3586715 (+) 648 WP_346828761.1 type 4a pilus biogenesis protein PilO -
  ABDX87_RS16015 (ABDX87_16015) pilP 3586712..3587239 (+) 528 WP_346828762.1 type 4a pilus biogenesis lipoprotein PilP -
  ABDX87_RS16020 (ABDX87_16020) pilQ 3587293..3589383 (+) 2091 WP_346828763.1 type IV pilus secretin PilQ Machinery gene
  ABDX87_RS16025 (ABDX87_16025) aroK 3589388..3589906 (+) 519 WP_346828764.1 shikimate kinase AroK -
  ABDX87_RS16030 (ABDX87_16030) aroB 3590036..3591139 (+) 1104 WP_346828765.1 3-dehydroquinate synthase -
  ABDX87_RS16035 (ABDX87_16035) - 3591150..3592772 (+) 1623 WP_346828766.1 AAA family ATPase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 74955.20 Da        Isoelectric Point: 5.1812

>NTDB_id=998042 ABDX87_RS16020 WP_346828763.1 3587293..3589383(+) (pilQ) [Pseudomonas abietaniphila strain BHJ04]
MTRILSMIGVSLWMAMLSPILQAANLKTLDVAALPGDRVELKLSFDGPVAAPRGYTTEQPARIALDLPGVTSQLAIKSRD
LGSGNAHSVVVVEAKDRTRVIINLTTLAPYSSRVEGNNLFVVVGQGAAAAQGSQPSTALGAPRVGVPPVPTQAAQPKPAP
RSYAPGPRSVKNVDFQRGELGEGNVVIELSDAGIAPDIQEQGGKIRVDFAKTQLPDPLRVRLDVKDFATPVQFVNSSVTG
DNTSISIEPSGAFDYSAYQTDNKLTISVRPLTNEDVQRRNAEKLVYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDT
VQGGITLRLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESLKQISELAPLRRELLQVNYAKAADIA
KLFQSVTSGDSKTDERGSITVDERTNNIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEANVDYDKALGVRWGGSST
HGNFTTGGNGTVTGVGNTNGPYVDMGVADPTSSIGLGFLTNNTILDLELSAMEKTGNGEVVSQPKVVTSDKETAKILKGT
EVPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYVNTVLGVPPIKKNEVNAKVLVADGETIVIGG
VFSNTQSKVVDKVPFLGDVPYVGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=998042 ABDX87_RS16020 WP_346828763.1 3587293..3589383(+) (pilQ) [Pseudomonas abietaniphila strain BHJ04]
ATGACTAGGATTCTTTCAATGATCGGCGTGTCGCTATGGATGGCGATGCTTTCACCGATTCTCCAGGCGGCCAACCTCAA
GACGCTGGATGTCGCTGCATTGCCGGGGGATCGGGTCGAGTTGAAACTGTCCTTCGACGGTCCGGTCGCCGCGCCGCGCG
GTTACACCACGGAGCAACCGGCGCGTATCGCGCTGGACCTGCCCGGCGTGACCAGTCAGTTGGCGATCAAGAGTCGCGAC
CTGGGTTCAGGTAATGCGCACAGTGTCGTGGTGGTCGAGGCCAAGGATCGCACGCGCGTGATCATCAACCTCACCACTCT
GGCGCCTTACAGCTCGCGGGTCGAAGGGAACAACTTGTTTGTGGTGGTCGGTCAGGGTGCTGCTGCCGCACAAGGTTCGC
AGCCGAGCACGGCTCTGGGCGCTCCGCGGGTTGGCGTGCCACCCGTGCCGACTCAGGCGGCCCAGCCCAAACCTGCGCCG
CGCTCGTACGCGCCGGGCCCGCGCTCGGTGAAAAATGTCGATTTTCAGCGCGGTGAGCTGGGCGAGGGTAACGTCGTCAT
CGAGCTGAGCGACGCGGGCATCGCGCCGGACATTCAGGAGCAGGGCGGCAAGATCCGTGTCGACTTCGCCAAGACCCAGC
TGCCTGATCCGTTGCGCGTACGGTTGGATGTGAAGGACTTCGCCACCCCGGTTCAGTTCGTCAACTCCAGTGTCACGGGC
GACAATACCAGTATCTCCATCGAGCCTTCCGGCGCGTTCGACTATTCGGCGTACCAGACTGACAACAAGCTGACCATCAG
CGTACGTCCGCTCACCAACGAGGACGTGCAGCGTCGTAATGCCGAAAAGCTTGTGTACACCGGTGAGAAGCTGTCTCTGA
ATTTCCAGGACATCGATGTTCGCTCGGTGCTGCAGCTGATCGCTGATTTCACCAACCTGAACCTGGTCGCCAGTGACACC
GTTCAGGGTGGCATTACCTTGCGCCTGCAGAACGTGCCGTGGGATCAGGCGCTGGACCTGGTGCTCAAGACCAAAGGCCT
GGACAAGCGCAAGGTCGGCAACGTGTTGCTGGTGGCGCCGGCGGATGAAATCGCTGCCCGCGAGCGTCAGGAACTGGAGT
CGCTGAAGCAGATCTCCGAGCTGGCGCCCCTGCGTCGTGAACTGTTGCAGGTGAACTACGCCAAGGCTGCCGACATTGCC
AAGCTGTTCCAGTCCGTGACCAGCGGCGATTCCAAGACAGACGAACGGGGTTCGATCACGGTCGATGAACGCACCAACAA
CATCATTGCCTATCAGACCCAGGATCGCCTGGACGAGCTGCGCCGTATCGTTTCCCAGCTGGACATTCCGGTTCGTCAGG
TGATGATCGAAGCACGTATCGTCGAAGCCAACGTCGATTACGACAAGGCGCTGGGCGTGCGTTGGGGTGGTTCGAGCACT
CACGGCAACTTCACCACCGGTGGTAATGGCACGGTGACTGGCGTGGGTAACACCAACGGTCCGTATGTCGACATGGGCGT
GGCCGATCCGACATCGTCGATTGGTCTGGGCTTTCTGACCAACAACACGATTCTGGATCTCGAGCTGTCGGCCATGGAAA
AAACCGGCAACGGTGAGGTGGTGTCGCAGCCCAAAGTCGTGACCTCGGACAAGGAAACCGCGAAGATCCTGAAAGGTACG
GAAGTGCCGTATCAGGAAGCCAGCTCAAGCGGCGCGACGTCGGTGTCGTTCAAAGAGGCTTCGCTGTCGCTGGAAGTGAC
GCCGCAGATCACCCCGGACAACCGCATCATCATGGAGGTGAAAGTCACCAAGGATGAGCCTGACTACGTGAACACGGTGC
TCGGCGTGCCGCCGATCAAGAAGAACGAGGTCAATGCCAAGGTCCTGGTTGCGGATGGCGAAACCATTGTAATTGGTGGT
GTGTTCTCCAATACGCAGAGTAAAGTCGTCGACAAGGTGCCATTTTTGGGCGATGTGCCGTATGTTGGCCGCCTTTTCCG
GCGGGATGTGGTTTCGGAGAAAAAATCCGAGCTGTTGGTGTTCCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTG
TGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(531-687)

Secretin and TonB N terminus short domain (STN)

(314-360)

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(388-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.715

100

0.754
  comQ Acinetobacter baylyi ADP1

43.062

100

0.432
  pilQ Acinetobacter baumannii strain A118

39.676

100

0.422
  pilQ Acinetobacter baumannii D1279779

39.676

100

0.422
  pilQ Legionella pneumophila strain ERS1305867

39.296

97.989

0.385
  pilQ Legionella pneumophila strain Lp02

39.15

97.989

0.384

Multiple sequence alignment