Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABDX87_RS14610 Genome accession   NZ_CP155619
Coordinates   3284394..3285887 (-) Length   497 a.a.
NCBI ID   WP_346828527.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3279394..3290887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS14600 (ABDX87_14600) - 3280905..3281825 (+) 921 WP_346828525.1 LysR substrate-binding domain-containing protein -
  ABDX87_RS14605 (ABDX87_14605) - 3282080..3284053 (+) 1974 WP_346828526.1 methyl-accepting chemotaxis protein -
  ABDX87_RS14610 (ABDX87_14610) comM 3284394..3285887 (-) 1494 WP_346828527.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABDX87_RS14615 (ABDX87_14615) - 3286000..3286104 (+) 105 Protein_2885 addiction module antidote protein, HigA family -
  ABDX87_RS14620 (ABDX87_14620) - 3286147..3286410 (-) 264 WP_346828528.1 accessory factor UbiK family protein -
  ABDX87_RS14625 (ABDX87_14625) glnK 3286830..3287168 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABDX87_RS14630 (ABDX87_14630) - 3287202..3288539 (+) 1338 WP_062379716.1 ammonium transporter -
  ABDX87_RS14635 (ABDX87_14635) - 3288777..3289208 (+) 432 WP_346828529.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABDX87_RS14640 (ABDX87_14640) sutA 3289302..3289634 (+) 333 WP_346828530.1 transcriptional regulator SutA -
  ABDX87_RS14645 (ABDX87_14645) - 3289762..3290457 (-) 696 WP_346828531.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52799.68 Da        Isoelectric Point: 7.5380

>NTDB_id=998039 ABDX87_RS14610 WP_346828527.1 3284394..3285887(-) (comM) [Pseudomonas abietaniphila strain BHJ04]
MSLAIVLSRAQVGVEAPAVTVETHLANGLPSLTLVGLPEGAVKESKDRVRSAILNCRLEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASAQVPTLALDGVECLGELALSGAIRPVQGVLPAALAARAAGHTLIVPAVNAEEACLASGLKVIAVSHL
LELVAHLNGHTVIAPYKSNGLILQTQPYPDLSEVQGQTAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
FEALEVAAIQSVASHAPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYHGEPTGRCRCSTDQIQRYRNKLSGPLLDRIDLHLTVARETTSLAATAQG
GESSASAAQRVSEARERQHKRQACANAFLDLPALREHCALLAEDEAWLETACERLNLSLRAAHRLLKVARTLADLENVDA
IAKSHIAEALQYRPSTG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=998039 ABDX87_RS14610 WP_346828527.1 3284394..3285887(-) (comM) [Pseudomonas abietaniphila strain BHJ04]
ATGTCCCTCGCCATTGTCCTCAGCCGCGCACAAGTCGGCGTCGAAGCCCCTGCCGTCACCGTGGAAACCCATCTGGCCAA
CGGCTTGCCCTCATTGACGCTGGTGGGATTACCCGAAGGCGCTGTGAAAGAAAGCAAGGACCGGGTGCGCAGTGCGATTC
TGAACTGTCGGCTGGAGTTTCCTGCGCGGCGTATCACTTTGAATCTCGCGCCTGCTGACTTGCCCAAGGACGGTGGCCGT
TTCGATTTGGCCATCGCGCTGGGTTTGCTGGCTGCCAGCGCGCAAGTCCCGACGCTGGCGCTCGATGGCGTGGAGTGCCT
GGGCGAACTTGCGCTGTCCGGTGCGATACGGCCTGTGCAGGGCGTGCTGCCCGCAGCGCTGGCCGCGCGCGCCGCTGGGC
ACACGTTGATCGTACCGGCGGTGAACGCCGAGGAAGCGTGTCTGGCCTCCGGGCTGAAGGTGATCGCAGTGAGTCATCTG
CTCGAACTGGTGGCTCATTTGAACGGCCACACCGTCATCGCGCCGTATAAGTCCAACGGACTGATTCTGCAAACGCAGCC
TTACCCCGATCTCAGCGAGGTCCAAGGCCAGACTGCCGCCAAGCGCGCGCTGTTGGTCGCTGCGGCCGGTGCTCACAACC
TTCTGTTCAGCGGGCCGCCCGGCACTGGCAAAACCCTGCTCGCCAGCCGTCTTCCCGGTCTACTGCCACCGCTGGATGAG
TTCGAGGCGCTGGAAGTCGCGGCGATTCAGTCGGTCGCCAGCCATGCGCCCTTGACCAGTTGGCCGCAAAGGCCCTTCCG
TCAACCGCATCACTCGGCGTCGGGGCCTGCGCTGGTGGGCGGGGGCAGCCGCCCGCAACCCGGAGAAATCACCCTCGCCC
ATCACGGCGTGCTGTTTCTGGACGAACTGCCCGAATTCGACCGACGTGTGCTGGAGGTTTTACGAGAGCCGCTGGAATCG
GGCCACATCGTCATTTCACGGGCCCGGGATCGCGTTCGTTTCCCGGCCCGGTTCCAACTGGTGGCGGCGATGAATCCGTG
CCCGTGCGGTTATCACGGAGAACCCACCGGGCGTTGTCGCTGCTCGACCGATCAGATTCAGCGCTACCGCAACAAACTCT
CCGGCCCGCTGCTGGACCGAATCGACCTGCACCTGACCGTCGCCCGCGAAACCACTTCTCTGGCCGCGACCGCGCAAGGC
GGCGAAAGCAGCGCCAGTGCCGCCCAGCGGGTGTCCGAAGCCCGTGAACGCCAGCACAAGCGTCAGGCTTGCGCCAATGC
GTTTCTCGACTTGCCCGCTTTGCGAGAACACTGCGCGCTGCTCGCCGAAGACGAGGCCTGGCTTGAAACCGCCTGTGAGC
GCTTGAATTTGTCTTTGCGTGCCGCACACCGTTTGCTGAAAGTCGCACGAACGCTTGCGGACCTGGAGAACGTCGATGCG
ATCGCCAAGAGCCATATCGCCGAAGCGTTGCAGTATCGGCCGTCGACCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Glaesserella parasuis strain SC1401

53.693

100

0.541
  comM Haemophilus influenzae Rd KW20

53.6

100

0.539
  comM Vibrio campbellii strain DS40M4

53.535

99.598

0.533
  comM Legionella pneumophila str. Paris

49.194

99.799

0.491
  comM Legionella pneumophila strain ERS1305867

49.194

99.799

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.467

Multiple sequence alignment