Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ABC806_RS08545 Genome accession   NZ_CP155539
Coordinates   1646442..1647077 (+) Length   211 a.a.
NCBI ID   WP_307772057.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641442..1652077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS08505 (ABC806_08495) - 1642422..1642826 (-) 405 WP_000846943.1 hypothetical protein -
  ABC806_RS08510 (ABC806_08500) - 1642823..1642987 (-) 165 WP_000727118.1 hypothetical protein -
  ABC806_RS08515 (ABC806_08505) - 1643284..1643403 (-) 120 WP_000346296.1 PncF family bacteriocin immunity protein -
  ABC806_RS08520 (ABC806_08510) blpU 1643406..1643636 (-) 231 WP_000379967.1 bacteriocin-like peptide BlpU -
  ABC806_RS08525 (ABC806_08515) blpJ 1643705..1643974 (-) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  ABC806_RS08530 (ABC806_08520) blpI 1644441..1644638 (-) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  ABC806_RS08535 (ABC806_08525) comA/nlmT 1644920..1645507 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  ABC806_RS08540 (ABC806_08530) comA/nlmT 1645434..1646414 (+) 981 WP_306424562.1 ABC transporter transmembrane domain-containing protein Regulator
  ABC806_RS08545 (ABC806_08535) comA/nlmT 1646442..1647077 (+) 636 WP_307772057.1 ATP-binding cassette domain-containing protein Regulator
  ABC806_RS08550 (ABC806_08540) - 1647088..1648449 (+) 1362 WP_001069075.1 bacteriocin secretion accessory protein -
  ABC806_RS08555 (ABC806_08545) blpC 1648506..1648634 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  ABC806_RS08560 (ABC806_08550) - 1648705..1650045 (-) 1341 WP_001017646.1 sensor histidine kinase -
  ABC806_RS08565 (ABC806_08555) comE/blpR 1650059..1650796 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC806_RS08570 (ABC806_08560) - 1650801..1651139 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  ABC806_RS08575 (ABC806_08565) - 1651415..1651744 (+) 330 WP_000132572.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23535.26 Da        Isoelectric Point: 9.2946

>NTDB_id=997597 ABC806_RS08545 WP_307772057.1 1646442..1647077(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
MKQGDKVSLVGVSGSGKTTLAKMIVNFFEPYKGHISINHQDIKNIDKKVLRRHINYLPQQAYIFNGSILENLTLGGNHMI
SQEDILKACEVAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSPVLILDEATSGLDVLTEKKVIDNLMSL
TDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=997597 ABC806_RS08545 WP_307772057.1 1646442..1647077(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
ATTAAACAAGGAGATAAGGTTAGCCTAGTTGGAGTTAGTGGTTCTGGTAAAACAACTTTAGCCAAAATGATTGTCAATTT
CTTTGAACCCTACAAAGGGCATATTTCCATCAATCATCAGGATATTAAAAACATTGATAAAAAAGTCTTGCGCCGTCATA
TTAATTACCTACCCCAACAAGCCTATATCTTTAATGGCTCTATTTTGGAAAACTTAACCTTGGGCGGTAATCATATGATT
AGTCAAGAAGATATTCTAAAAGCTTGTGAAGTAGCTGAAATCCGTCAAGACATTGAAAGAATGCCTATGGGCTATCAAAC
TCAGCTCTCTGATGGAGCTGGTCTATCAGGAGGACAGAAGCAACGAATCGCTCTCGCTCGTGCTCTTTTAACTAAATCTC
CTGTTTTAATACTAGATGAAGCTACTAGCGGTCTTGATGTCTTGACTGAGAAAAAGGTTATAGATAATCTTATGTCTCTA
ACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACCAACCGTGTCATTGTTCTTGACCAGGG
GAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAGGCGCAAGGTTTCTACCATCATCTATTCAATAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

71.429

99.526

0.711
  comA Streptococcus gordonii str. Challis substr. CH1

67.308

98.578

0.664
  comA Streptococcus pneumoniae Rx1

66.351

100

0.664
  comA Streptococcus pneumoniae D39

66.351

100

0.664
  comA Streptococcus pneumoniae R6

66.351

100

0.664
  comA Streptococcus mitis NCTC 12261

66.351

100

0.664
  comA Streptococcus mitis SK321

65.877

100

0.659
  comA Streptococcus pneumoniae TIGR4

65.877

100

0.659
  rcrQ Streptococcus mutans UA159

38.679

100

0.389

Multiple sequence alignment