Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ABC806_RS08540 Genome accession   NZ_CP155539
Coordinates   1645434..1646414 (+) Length   326 a.a.
NCBI ID   WP_306424562.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640434..1651414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS08490 (ABC806_08480) blpN 1640792..1640995 (-) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  ABC806_RS08495 (ABC806_08485) blpM 1641011..1641265 (-) 255 WP_000379879.1 two-peptide bacteriocin subunit BlpM -
  ABC806_RS08505 (ABC806_08495) - 1642422..1642826 (-) 405 WP_000846943.1 hypothetical protein -
  ABC806_RS08510 (ABC806_08500) - 1642823..1642987 (-) 165 WP_000727118.1 hypothetical protein -
  ABC806_RS08515 (ABC806_08505) - 1643284..1643403 (-) 120 WP_000346296.1 PncF family bacteriocin immunity protein -
  ABC806_RS08520 (ABC806_08510) blpU 1643406..1643636 (-) 231 WP_000379967.1 bacteriocin-like peptide BlpU -
  ABC806_RS08525 (ABC806_08515) blpJ 1643705..1643974 (-) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  ABC806_RS08530 (ABC806_08520) blpI 1644441..1644638 (-) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  ABC806_RS08535 (ABC806_08525) comA/nlmT 1644920..1645507 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  ABC806_RS08540 (ABC806_08530) comA/nlmT 1645434..1646414 (+) 981 WP_306424562.1 ABC transporter transmembrane domain-containing protein Regulator
  ABC806_RS08545 (ABC806_08535) comA/nlmT 1646442..1647077 (+) 636 WP_307772057.1 ATP-binding cassette domain-containing protein Regulator
  ABC806_RS08550 (ABC806_08540) - 1647088..1648449 (+) 1362 WP_001069075.1 bacteriocin secretion accessory protein -
  ABC806_RS08555 (ABC806_08545) blpC 1648506..1648634 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  ABC806_RS08560 (ABC806_08550) - 1648705..1650045 (-) 1341 WP_001017646.1 sensor histidine kinase -
  ABC806_RS08565 (ABC806_08555) comE/blpR 1650059..1650796 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC806_RS08570 (ABC806_08560) - 1650801..1651139 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36975.10 Da        Isoelectric Point: 4.8113

>NTDB_id=997596 ABC806_RS08540 WP_306424562.1 1645434..1646414(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
MVLSSLLVTIINIGGSYYLQGILDEYIPNQMKSTLGIISVGLVITYILQQVMSFSRDYLLTVLSQRLSIDVILSYIRHIF
ELPMSFFATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLAQNPNLFLLSLISIPIYMFIIFSFMKPFE
KMNHDVMQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLSKYSILQTSLKQGTKLVLNILILWFG
AQLVMSSKISIGQLITFNTLFSYFTTPMENIINLQTKLQSAKVANNRLNEVYLVESEFQVQENPVHSHFLMGDIEFDDLS
YKYGFG

Nucleotide


Download         Length: 981 bp        

>NTDB_id=997596 ABC806_RS08540 WP_306424562.1 1645434..1646414(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
ATTGTTCTCTCAAGCTTATTGGTCACTATTATCAATATAGGTGGTTCTTACTATCTCCAAGGAATCTTGGATGAATACAT
TCCAAATCAGATGAAATCAACTTTAGGAATCATCTCAGTTGGTCTGGTTATCACCTATATCCTCCAACAAGTCATGAGCT
TCTCCAGAGATTATCTCCTAACCGTTCTGAGTCAGAGATTAAGTATTGATGTGATTTTATCCTATATTCGCCATATTTTT
GAACTTCCCATGTCTTTCTTTGCGACACGTCGTACAGGAGAAATCATTTCACGATTCACAGATGCTAACTCTATTATAGA
TGCCTTGGCTTCTACCATTCTTTCTCTTTTTCTGGATGTTTCTATTCTGATTCTTGTAGGAGGCGTCTTACTGGCACAAA
ACCCTAATCTCTTCCTTCTTTCTCTTATTTCCATTCCTATATACATGTTCATCATCTTTTCTTTTATGAAACCTTTCGAA
AAAATGAACCATGATGTCATGCAAAGTAATTCTATGGTTAGCTCTGCCATTATCGAAGATATCAACGGGATTGAAACTAT
AAAGTCGCTCACGAGTGAAGAAAATCGCTATCAAAATATAGACAGCGAATTTGTAGATTATTTGGAAAAATCCTTTAAGC
TCAGTAAATATTCTATTTTACAAACGAGTTTAAAGCAGGGAACAAAATTAGTTCTGAATATCCTTATCCTATGGTTTGGC
GCTCAATTAGTCATGTCAAGTAAAATTTCTATCGGTCAGCTGATTACCTTTAACACACTTTTTTCTTACTTTACAACTCC
TATGGAAAATATTATCAACCTCCAAACCAAACTCCAATCTGCGAAGGTCGCTAATAACCGTTTGAACGAAGTCTATCTAG
TCGAATCTGAATTTCAAGTTCAAGAAAACCCTGTTCATTCACATTTTTTGATGGGCGATATTGAATTTGATGACCTTTCT
TATAAGTATGGTTTTGGATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(2-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

73.006

100

0.73
  comA Streptococcus gordonii str. Challis substr. CH1

67.584

100

0.678
  comA Streptococcus mitis NCTC 12261

67.178

100

0.672
  comA Streptococcus pneumoniae Rx1

66.871

100

0.669
  comA Streptococcus pneumoniae D39

66.871

100

0.669
  comA Streptococcus pneumoniae R6

66.871

100

0.669
  comA Streptococcus pneumoniae TIGR4

66.564

100

0.666
  comA Streptococcus mitis SK321

66.564

100

0.666

Multiple sequence alignment