Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABC804_RS08510 Genome accession   NZ_CP155536
Coordinates   1610293..1611024 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605293..1616024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS08480 (ABC804_08475) blpC 1605843..1605998 (+) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -
  ABC804_RS08485 (ABC804_08480) - 1606040..1607380 (-) 1341 WP_001017622.1 sensor histidine kinase -
  ABC804_RS08490 (ABC804_08485) comE/blpR 1607394..1608131 (-) 738 WP_001219127.1 response regulator transcription factor Regulator
  ABC804_RS08495 (ABC804_08490) - 1608136..1608474 (-) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  ABC804_RS08500 (ABC804_08495) - 1608750..1609079 (+) 330 WP_000132570.1 hypothetical protein -
  ABC804_RS08505 (ABC804_08500) - 1609247..1610296 (-) 1050 WP_000653752.1 ABC transporter permease -
  ABC804_RS08510 (ABC804_08505) pptA 1610293..1611024 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ABC804_RS08515 (ABC804_08510) - 1611092..1611502 (+) 411 WP_001278301.1 HIT family protein -
  ABC804_RS08520 (ABC804_08515) - 1611512..1611799 (+) 288 WP_000777760.1 hypothetical protein -
  ABC804_RS08525 (ABC804_08520) - 1611961..1612155 (+) 195 WP_001808905.1 hypothetical protein -
  ABC804_RS08530 (ABC804_08525) dnaJ 1612477..1613613 (-) 1137 WP_001066293.1 molecular chaperone DnaJ -
  ABC804_RS08535 (ABC804_08530) - 1613818..1614171 (-) 354 WP_000115730.1 hypothetical protein -
  ABC804_RS08540 (ABC804_08535) dnaK 1614184..1616007 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=997450 ABC804_RS08510 WP_000889923.1 1610293..1611024(-) (pptA) [Streptococcus pneumoniae strain M264-3]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=997450 ABC804_RS08510 WP_000889923.1 1610293..1611024(-) (pptA) [Streptococcus pneumoniae strain M264-3]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment