Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABC811_RS09135 Genome accession   NZ_CP155535
Coordinates   1786369..1788348 (-) Length   659 a.a.
NCBI ID   WP_000742233.1    Uniprot ID   A0A0B7LWN8
Organism   Streptococcus pneumoniae strain PJ755/1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781369..1793348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC811_RS09115 (ABC811_09115) amiF 1781867..1782793 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  ABC811_RS09120 (ABC811_09120) amiE 1782804..1783871 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  ABC811_RS09125 (ABC811_09125) amiD 1783880..1784806 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  ABC811_RS09130 (ABC811_09130) amiC 1784806..1786302 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  ABC811_RS09135 (ABC811_09135) amiA3 1786369..1788348 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator
  ABC811_RS09140 (ABC811_09140) - 1789035..1790228 (-) 1194 WP_000835622.1 O-antigen ligase -
  ABC811_RS09145 (ABC811_09145) gtfA 1790366..1791808 (-) 1443 WP_001818942.1 sucrose phosphorylase -
  ABC811_RS09150 (ABC811_09150) - 1791811..1792020 (-) 210 WP_000692982.1 hypothetical protein -
  ABC811_RS09155 (ABC811_09155) - 1792027..1792860 (-) 834 WP_000806567.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72463.41 Da        Isoelectric Point: 4.6642

>NTDB_id=997343 ABC811_RS09135 WP_000742233.1 1786369..1788348(-) (amiA3) [Streptococcus pneumoniae strain PJ755/1]
MKKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAP
AVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTSTDFSTV
GVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYW
DKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTS
KTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKTFGDLVAAQLPAYGDEWKG
VNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQQMTSDE
FLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKLQDKVVTKEEYEKAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=997343 ABC811_RS09135 WP_000742233.1 1786369..1788348(-) (amiA3) [Streptococcus pneumoniae strain PJ755/1]
ATGAAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGCAGCATGCAGTTCTTCAAA
ATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCTTGGACTACCTGATTTCAA
GTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAATTACGGTAATCTTGCTCCT
GCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAAAGGGGTTAAATGGTTTAC
CTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACGCAGCAGATAAAAAATCAG
AAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCAACAGATTTTTCAACAGTT
GGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTGGAACTCTAAGTTGACCTA
TTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAACCAACAGATCCGACATCCT
TGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTAAAAAATGAGCAATATTGG
GATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGAGTCGCTAGAGCGTAACTT
CACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTGCAGAAGAATACAAGGACA
ATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAAAGTTACAACTATACTTCT
AAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCAAGCCTTGAATTTTGCTCT
TGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTAATTTATTTGTAAAACCAG
ACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTATGGTGATGAGTGGAAAGGT
GTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTGCGAAAGCTAAGAAAGCTTT
AGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAAAACTACATATCTCGTATTC
AGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCAACAAATGACAAGTGATGAA
TTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCGGGAGGAGTTTCATGGGGGCCAGA
CTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAAACATATTTAGGATTTGATA
ATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAAGCTGCCAAAGAGACAAGC
GACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACTCTTTATTCCTGCTATGGC
TTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAAACAGGCTCTAAGGGGTCAG
ATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAAAGCTCGTGAAAAATGGTTG
AAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LWN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.97

100

0.671
  amiA Streptococcus salivarius strain HSISS4

66.92

100

0.669
  amiA3 Streptococcus thermophilus LMG 18311

66.818

100

0.669

Multiple sequence alignment