Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   ABC811_RS09120 Genome accession   NZ_CP155535
Coordinates   1782804..1783871 (-) Length   355 a.a.
NCBI ID   WP_000159554.1    Uniprot ID   A0A062WMA1
Organism   Streptococcus pneumoniae strain PJ755/1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1777804..1788871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC811_RS09080 (ABC811_09080) rplQ 1777872..1778258 (-) 387 WP_000331493.1 50S ribosomal protein L17 -
  ABC811_RS09085 (ABC811_09085) - 1778270..1779205 (-) 936 WP_000568988.1 DNA-directed RNA polymerase subunit alpha -
  ABC811_RS09090 (ABC811_09090) rpsK 1779248..1779631 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  ABC811_RS09095 (ABC811_09095) rpsM 1779649..1780014 (-) 366 WP_000090781.1 30S ribosomal protein S13 -
  ABC811_RS09100 (ABC811_09100) rpmJ 1780032..1780148 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  ABC811_RS09105 (ABC811_09105) infA 1780173..1780391 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  ABC811_RS09110 (ABC811_09110) - 1780557..1781510 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  ABC811_RS09115 (ABC811_09115) amiF 1781867..1782793 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  ABC811_RS09120 (ABC811_09120) amiE 1782804..1783871 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  ABC811_RS09125 (ABC811_09125) amiD 1783880..1784806 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  ABC811_RS09130 (ABC811_09130) amiC 1784806..1786302 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  ABC811_RS09135 (ABC811_09135) amiA3 1786369..1788348 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39490.09 Da        Isoelectric Point: 4.8727

>NTDB_id=997340 ABC811_RS09120 WP_000159554.1 1782804..1783871(-) (amiE) [Streptococcus pneumoniae strain PJ755/1]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=997340 ABC811_RS09120 WP_000159554.1 1782804..1783871(-) (amiE) [Streptococcus pneumoniae strain PJ755/1]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTCGTTGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGATTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATTCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A062WMA1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.169

100

0.882

  amiE Streptococcus thermophilus LMG 18311

86.479

100

0.865

  amiE Streptococcus thermophilus LMD-9

86.479

100

0.865

  oppD Streptococcus mutans UA159

54.545

99.155

0.541


Multiple sequence alignment