Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABDE97_RS17760 Genome accession   NZ_CP155455
Coordinates   3670746..3671564 (-) Length   272 a.a.
NCBI ID   WP_281717928.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00278     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665746..3676564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDE97_RS17745 (ABDE97_17725) pilE 3665963..3666388 (-) 426 WP_000788339.1 type IV pilin protein Machinery gene
  ABDE97_RS17750 (ABDE97_17730) pilY2 3666385..3666867 (-) 483 WP_001046416.1 type IV pilin protein Machinery gene
  ABDE97_RS17755 (ABDE97_17735) pilY1 3666880..3670734 (-) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  ABDE97_RS17760 (ABDE97_17740) pilX 3670746..3671564 (-) 819 WP_281717928.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABDE97_RS17765 (ABDE97_17745) pilW 3671561..3672562 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABDE97_RS17770 (ABDE97_17750) pilV 3672563..3673123 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABDE97_RS17775 (ABDE97_17755) fimU 3673117..3673590 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABDE97_RS17780 (ABDE97_17760) ispH 3673760..3674710 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABDE97_RS17785 (ABDE97_17765) gmk 3674833..3675462 (+) 630 WP_000015937.1 guanylate kinase -
  ABDE97_RS17790 (ABDE97_17770) rpoZ 3675535..3675813 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABDE97_RS17795 (ABDE97_17775) - 3675852..3675981 (+) 130 Protein_3475 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28846.73 Da        Isoelectric Point: 6.2314

>NTDB_id=996437 ABDE97_RS17760 WP_281717928.1 3670746..3671564(-) (pilX) [Acinetobacter baumannii strain 2024CK-00278]
MTHLNYKKIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=996437 ABDE97_RS17760 WP_281717928.1 3670746..3671564(-) (pilX) [Acinetobacter baumannii strain 2024CK-00278]
ATGACCCATTTAAATTATAAAAAAATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment