Detailed information NTG0995324

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AAVC46_RS11650
• Genome accession: NZ_CP154913
• Coordinates: 2218537..2219223 (-)
• Length: 228 a.a.
• NCBI ID: WP_340973906.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FUA2119
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2213537..2224223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVC46_RS11615 (AAVC46_11615)	fliW	2213670..2214104 (-)	435	WP_307500331.1	flagellar assembly protein FliW	-
AAVC46_RS11620 (AAVC46_11620)	-	2214133..2214711 (-)	579	WP_106050640.1	DUF6470 family protein	-
AAVC46_RS11625 (AAVC46_11625)	flgL	2214760..2215671 (-)	912	WP_106050639.1	flagellar hook-associated protein FlgL	-
AAVC46_RS11630 (AAVC46_11630)	flgK	2215681..2217201 (-)	1521	WP_307500333.1	flagellar hook-associated protein FlgK	-
AAVC46_RS11635 (AAVC46_11635)	-	2217217..2217699 (-)	483	WP_034660146.1	flagellar protein FlgN	-
AAVC46_RS11640 (AAVC46_11640)	flgM	2217718..2217981 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
AAVC46_RS11645 (AAVC46_11645)	-	2218061..2218480 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
AAVC46_RS11650 (AAVC46_11650)	comFC	2218537..2219223 (-)	687	WP_340973906.1	ComF family protein	Machinery gene
AAVC46_RS11655 (AAVC46_11655)	-	2219220..2219513 (-)	294	WP_060597398.1	competence protein ComFB	-
AAVC46_RS11660 (AAVC46_11660)	comFA	2219580..2220959 (-)	1380	WP_307500336.1	DEAD/DEAH box helicase	Machinery gene
AAVC46_RS11665 (AAVC46_11665)	-	2221080..2221922 (-)	843	WP_034660152.1	DegV family protein	-
AAVC46_RS11670 (AAVC46_11670)	degU	2222140..2222829 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AAVC46_RS11675 (AAVC46_11675)	degS	2222894..2224069 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26076.48 Da
• Isoelectric Point: 9.9472

>NTDB_id=995324 AAVC46_RS11650 WP_340973906.1 2218537..2219223(-) (comFC) [Bacillus pumilus strain FUA2119]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKRKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=995324 AAVC46_RS11650 WP_340973906.1 2218537..2219223(-) (comFC) [Bacillus pumilus strain FUA2119]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGATTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAGAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (160-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis NCTC 12261	38.865	100	0.39
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae Rx1	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae D39	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae R6	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae TIGR4	38.865	100	0.39