Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAVC46_RS11660 Genome accession   NZ_CP154913
Coordinates   2219580..2220959 (-) Length   459 a.a.
NCBI ID   WP_307500336.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214580..2225959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS11625 (AAVC46_11625) flgL 2214760..2215671 (-) 912 WP_106050639.1 flagellar hook-associated protein FlgL -
  AAVC46_RS11630 (AAVC46_11630) flgK 2215681..2217201 (-) 1521 WP_307500333.1 flagellar hook-associated protein FlgK -
  AAVC46_RS11635 (AAVC46_11635) - 2217217..2217699 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AAVC46_RS11640 (AAVC46_11640) flgM 2217718..2217981 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVC46_RS11645 (AAVC46_11645) - 2218061..2218480 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  AAVC46_RS11650 (AAVC46_11650) comFC 2218537..2219223 (-) 687 WP_340973906.1 ComF family protein Machinery gene
  AAVC46_RS11655 (AAVC46_11655) - 2219220..2219513 (-) 294 WP_060597398.1 competence protein ComFB -
  AAVC46_RS11660 (AAVC46_11660) comFA 2219580..2220959 (-) 1380 WP_307500336.1 DEAD/DEAH box helicase Machinery gene
  AAVC46_RS11665 (AAVC46_11665) - 2221080..2221922 (-) 843 WP_034660152.1 DegV family protein -
  AAVC46_RS11670 (AAVC46_11670) degU 2222140..2222829 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAVC46_RS11675 (AAVC46_11675) degS 2222894..2224069 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAVC46_RS11680 (AAVC46_11680) - 2224291..2224959 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52656.70 Da        Isoelectric Point: 10.2298

>NTDB_id=995325 AAVC46_RS11660 WP_307500336.1 2219580..2220959(-) (comFA) [Bacillus pumilus strain FUA2119]
MNMDKAMELRQQLQSRHLLTAETRSSQSDLDWLEEKGFVIRTPAIERKANGLTCCRCGISKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKNKSDLLIWAVCGAGKTEVLFYGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKITKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=995325 AAVC46_RS11660 WP_307500336.1 2219580..2220959(-) (comFA) [Bacillus pumilus strain FUA2119]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGAAGCTCACA
GTCCGATTTGGATTGGCTGGAGGAGAAAGGGTTCGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTATATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGGGCGTCCGAAAAATTGATCGAAGCGATAAAAA
ACAAATCTGACCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTCTTTTACGGAATTGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGCCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACATGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGATAACGAAGGTCCTTAGAGA
ACACCGCTTAAATGTGGAGGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534

Multiple sequence alignment