Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAG092_RS13905 Genome accession   NZ_CP154874
Coordinates   2873992..2876052 (+) Length   686 a.a.
NCBI ID   WP_373387130.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868992..2881052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS13885 (AAG092_13815) pilM 2871096..2872160 (+) 1065 WP_110682985.1 pilus assembly protein PilM Machinery gene
  AAG092_RS13890 (AAG092_13820) - 2872160..2872792 (+) 633 WP_373387128.1 PilN domain-containing protein -
  AAG092_RS13895 (AAG092_13825) pilO 2872789..2873415 (+) 627 WP_373387129.1 type 4a pilus biogenesis protein PilO -
  AAG092_RS13900 (AAG092_13830) pilP 2873415..2873938 (+) 524 Protein_2741 type 4a pilus biogenesis lipoprotein PilP -
  AAG092_RS13905 (AAG092_13835) pilQ 2873992..2876052 (+) 2061 WP_373387130.1 type IV pilus secretin PilQ Machinery gene
  AAG092_RS13910 (AAG092_13840) aroK 2876057..2876575 (+) 519 WP_110682990.1 shikimate kinase AroK -
  AAG092_RS13915 (AAG092_13845) aroB 2876625..2877728 (+) 1104 WP_110683039.1 3-dehydroquinate synthase -
  AAG092_RS13920 (AAG092_13850) - 2877738..2879351 (+) 1614 WP_373387131.1 AAA family ATPase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 74406.42 Da        Isoelectric Point: 4.5224

>NTDB_id=994337 AAG092_RS13905 WP_373387130.1 2873992..2876052(+) (pilQ) [Pseudomonas alcaligenes strain Med1]
MNRALSCLGVSFFLAGFAPSLLAANLQGLDVAALPGDKIELKLSFDEPVPAPRGYTIEQPARIALDMPGVSSKLGEKNRE
LGVGNARSVTVVEAQNRTRLIINLSTLVPYSTRSEGSNVFVVVGDSSASQAASASAAPAPVAKPLAQMPAGRAIRAIDFQ
RGEAGEGNVVIELSDPSVNPDIQEQGGKIRLEFLKTQLPEALRARLDVKDFATPVQFVTAASQGDRVSISIEPTGLYDYL
AFQTDNKLTVSIKPLSADDVEKRKAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPWDQ
ALDLVLKTRGLDKRQVGNVLLIAPADEIAARERQELEARQQLAELAPLRREVVQLNYAKASDIAKLFEDASEEGSMDKDM
RGKIIYDDRTNSLIAYLTQDRLDELRRIVTQLDIPVRQVMVEARIVEANVDFDKELGVEWRGVGLGDNNWVVGGTNSVEK
DTDPLEFQGGTFVDMAAAGRTSGLNLGFITDNTLLDLELSAMEKTGNGEIISQPKVVTSDKETAKILKGTKIPYQEASSS
GATSIVFAEANLSLEVTPQITPDNRVIMEVKVNKDAADFANQVDGTPSIQTNEVNAKVLVSDGETIVIGGIFSNTQSKAV
DKVPLLGDIPYIGRLFRRDVVQDSKAELLVFLTPRIMNNQAIAVSN

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=994337 AAG092_RS13905 WP_373387130.1 2873992..2876052(+) (pilQ) [Pseudomonas alcaligenes strain Med1]
ATGAATAGGGCACTTTCTTGCTTGGGCGTATCCTTTTTCCTGGCGGGCTTTGCGCCGAGCCTGCTGGCGGCAAACCTGCA
AGGTTTGGACGTTGCTGCTCTGCCCGGTGACAAGATTGAGTTGAAATTGAGTTTCGACGAGCCGGTCCCGGCTCCGCGTG
GCTACACCATCGAGCAGCCTGCGCGTATCGCCCTGGACATGCCCGGGGTCTCCAGCAAACTGGGGGAGAAGAATCGTGAA
CTGGGCGTTGGCAACGCCAGAAGCGTGACCGTGGTGGAGGCGCAGAATCGTACCCGTCTGATCATCAACCTCTCAACCCT
GGTGCCCTACAGCACTCGCAGCGAGGGCAGCAACGTCTTCGTGGTGGTCGGTGATTCCTCGGCTTCTCAGGCAGCGTCTG
CGAGCGCCGCGCCTGCCCCCGTTGCCAAGCCGCTTGCCCAGATGCCGGCTGGTCGCGCGATTCGTGCCATAGACTTCCAG
CGTGGCGAGGCGGGTGAAGGTAATGTGGTGATCGAGCTTTCCGATCCCAGCGTCAATCCTGACATTCAGGAGCAAGGAGG
GAAAATTCGTCTCGAGTTCCTGAAGACGCAACTGCCCGAGGCCCTGCGCGCGCGCCTTGATGTCAAGGACTTCGCCACTC
CCGTGCAGTTTGTCACCGCCGCTTCCCAGGGGGATCGGGTCAGCATCAGTATCGAGCCGACCGGCCTGTATGATTACCTG
GCGTTTCAGACGGACAACAAGCTGACGGTGAGCATCAAGCCGCTCAGTGCCGATGATGTCGAGAAACGCAAGGCCGAGCG
CTTCGCCTACACCGGGGAAAAGCTTTCCCTGAACTTCCAGGACATCGATGTGCGCTCGGTGCTGCAGTTGATCGCCGACT
TCACCGACCTGAACCTGGTGGCCAGTGACACGGTGCAGGGCAATATCACCCTGCGCCTGCAGAATGTGCCTTGGGATCAG
GCCCTGGACCTGGTCCTGAAAACTCGTGGCCTGGACAAGCGTCAGGTCGGTAATGTGCTGTTGATCGCCCCGGCGGACGA
GATCGCTGCGCGTGAACGGCAGGAGCTCGAGGCTCGCCAACAGCTGGCGGAGTTGGCGCCCCTGCGTCGCGAGGTGGTGC
AGCTCAACTATGCCAAGGCATCCGATATTGCCAAACTGTTCGAGGATGCCTCGGAAGAAGGCAGCATGGACAAGGACATG
CGCGGCAAGATCATTTACGACGATCGTACCAATAGCCTGATCGCCTATCTGACCCAGGATCGACTGGACGAGCTACGCCG
CATCGTGACCCAGCTCGATATTCCGGTTCGTCAAGTGATGGTCGAGGCACGGATAGTCGAGGCGAATGTCGACTTCGACA
AGGAGCTGGGTGTCGAGTGGCGCGGCGTCGGTCTGGGTGATAACAACTGGGTCGTTGGCGGTACCAACAGTGTCGAGAAG
GACACCGATCCTCTGGAGTTCCAGGGTGGGACCTTCGTGGACATGGCGGCTGCCGGTCGTACCTCAGGTTTGAACCTGGG
CTTCATCACTGACAATACGCTGCTGGACCTCGAATTGTCGGCCATGGAAAAGACCGGTAATGGCGAGATCATCTCTCAGC
CTAAGGTTGTCACTTCCGATAAGGAAACTGCAAAGATCCTGAAGGGCACCAAGATTCCTTATCAGGAAGCATCCTCCAGC
GGTGCAACTTCTATTGTATTTGCCGAGGCAAATCTTTCCCTTGAGGTTACTCCGCAAATTACGCCGGATAATCGAGTGAT
TATGGAAGTTAAAGTTAATAAGGATGCTGCTGACTTTGCTAACCAGGTAGATGGCACACCGTCCATCCAGACCAACGAGG
TCAATGCCAAGGTTCTGGTCAGCGATGGCGAAACCATCGTGATTGGCGGCATCTTCAGCAACACCCAGTCGAAGGCTGTG
GACAAGGTTCCGCTCCTGGGTGACATCCCCTACATCGGGCGTCTGTTCCGTCGTGACGTGGTACAGGACTCGAAAGCGGA
GCTGCTGGTCTTCCTGACACCGCGGATCATGAACAATCAGGCCATCGCGGTAAGCAACTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(298-344)

Bacterial type II and III secretion system protein (Secretin)

(521-677)

AMIN domain (AMIN)

(37-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(371-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.687

100

0.735
  pilQ Acinetobacter baumannii D1279779

40.629

100

0.414
  pilQ Acinetobacter baumannii strain A118

40.629

100

0.414
  comQ Acinetobacter baylyi ADP1

41.108

100

0.411
  pilQ Legionella pneumophila strain Lp02

37.761

97.668

0.369
  pilQ Legionella pneumophila strain ERS1305867

37.761

97.668

0.369

Multiple sequence alignment