Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V6C34_RS10125 | Genome accession | NZ_CP154861 |
| Coordinates | 2046032..2046502 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain BSN31 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2017313..2067545 | 2046032..2046502 | within | 0 |
Gene organization within MGE regions
Location: 2017313..2067545
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C34_RS09920 (V6C34_09920) | scn | 2017313..2017663 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| V6C34_RS09925 (V6C34_09925) | - | 2018348..2018797 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| V6C34_RS09930 (V6C34_09930) | - | 2018892..2019227 (-) | 336 | Protein_1920 | SH3 domain-containing protein | - |
| V6C34_RS09935 (V6C34_09935) | sak | 2019877..2020368 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| V6C34_RS09940 (V6C34_09940) | - | 2020559..2021314 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| V6C34_RS09945 (V6C34_09945) | - | 2021326..2021580 (-) | 255 | WP_000611512.1 | phage holin | - |
| V6C34_RS09950 (V6C34_09950) | - | 2021632..2021739 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| V6C34_RS09955 (V6C34_09955) | pepG1 | 2021792..2021926 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| V6C34_RS09960 (V6C34_09960) | - | 2022118..2022414 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| V6C34_RS09965 (V6C34_09965) | - | 2022472..2022759 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| V6C34_RS09970 (V6C34_09970) | - | 2022806..2022958 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| V6C34_RS09975 (V6C34_09975) | - | 2022948..2026733 (-) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| V6C34_RS09980 (V6C34_09980) | - | 2026749..2028233 (-) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| V6C34_RS09985 (V6C34_09985) | - | 2028230..2032762 (-) | 4533 | WP_334212833.1 | phage tail tape measure protein | - |
| V6C34_RS09990 (V6C34_09990) | - | 2032819..2032956 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| V6C34_RS09995 (V6C34_09995) | - | 2033007..2033357 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| V6C34_RS10000 (V6C34_10000) | - | 2033407..2033637 (-) | 231 | Protein_1934 | Ig-like domain-containing protein | - |
| V6C34_RS10005 (V6C34_10005) | - | 2033673..2034317 (-) | 645 | WP_000985142.1 | major tail protein | - |
| V6C34_RS10010 (V6C34_10010) | - | 2034318..2034725 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| V6C34_RS10015 (V6C34_10015) | - | 2034722..2035126 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| V6C34_RS10020 (V6C34_10020) | - | 2035123..2035485 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| V6C34_RS10025 (V6C34_10025) | - | 2035469..2035753 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| V6C34_RS10030 (V6C34_10030) | - | 2035743..2036027 (-) | 285 | WP_000238241.1 | hypothetical protein | - |
| V6C34_RS10035 (V6C34_10035) | - | 2036047..2037192 (-) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| V6C34_RS10040 (V6C34_10040) | - | 2037215..2037952 (-) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| V6C34_RS10045 (V6C34_10045) | - | 2037936..2039099 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| V6C34_RS10050 (V6C34_10050) | - | 2039115..2040776 (-) | 1662 | WP_000625096.1 | terminase large subunit | - |
| V6C34_RS10055 (V6C34_10055) | - | 2040773..2041117 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| V6C34_RS10060 (V6C34_10060) | - | 2041248..2041547 (-) | 300 | WP_000988332.1 | HNH endonuclease | - |
| V6C34_RS10065 (V6C34_10065) | - | 2041779..2042195 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| V6C34_RS10070 (V6C34_10070) | - | 2042223..2042423 (-) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| V6C34_RS10075 (V6C34_10075) | - | 2042423..2042572 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| V6C34_RS10080 (V6C34_10080) | - | 2042569..2042775 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| V6C34_RS10085 (V6C34_10085) | - | 2042772..2043017 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| V6C34_RS10090 (V6C34_10090) | - | 2043054..2043590 (-) | 537 | WP_000185693.1 | dUTPase | - |
| V6C34_RS10095 (V6C34_10095) | - | 2043583..2043831 (-) | 249 | WP_015990315.1 | DUF1024 family protein | - |
| V6C34_RS10100 (V6C34_10100) | - | 2043846..2044088 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| V6C34_RS10105 (V6C34_10105) | - | 2044092..2044460 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| V6C34_RS10110 (V6C34_10110) | - | 2044473..2044875 (-) | 403 | Protein_1956 | RusA family crossover junction endodeoxyribonuclease | - |
| V6C34_RS10115 (V6C34_10115) | - | 2044884..2045102 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| V6C34_RS10120 (V6C34_10120) | - | 2045109..2046002 (-) | 894 | WP_049294669.1 | DnaD domain-containing protein | - |
| V6C34_RS10125 (V6C34_10125) | ssbA | 2046032..2046502 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| V6C34_RS10130 (V6C34_10130) | - | 2046503..2047120 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| V6C34_RS10135 (V6C34_10135) | - | 2047201..2048121 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| V6C34_RS10140 (V6C34_10140) | - | 2048123..2050066 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| V6C34_RS10145 (V6C34_10145) | - | 2050075..2050338 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| V6C34_RS10150 (V6C34_10150) | - | 2050347..2050607 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| V6C34_RS10155 (V6C34_10155) | - | 2050612..2050914 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| V6C34_RS10160 (V6C34_10160) | - | 2051009..2051170 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| V6C34_RS10165 (V6C34_10165) | - | 2051167..2051490 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| V6C34_RS10170 (V6C34_10170) | - | 2051545..2051925 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| V6C34_RS10175 (V6C34_10175) | - | 2051912..2052109 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| V6C34_RS10180 (V6C34_10180) | - | 2052125..2052874 (-) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| V6C34_RS10185 (V6C34_10185) | - | 2052931..2053140 (+) | 210 | WP_000772137.1 | hypothetical protein | - |
| V6C34_RS10190 (V6C34_10190) | - | 2053133..2053273 (-) | 141 | WP_000939495.1 | hypothetical protein | - |
| V6C34_RS10195 (V6C34_10195) | - | 2053288..2053731 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| V6C34_RS10200 (V6C34_10200) | - | 2053744..2053986 (-) | 243 | WP_000639923.1 | DUF739 family protein | - |
| V6C34_RS10205 (V6C34_10205) | - | 2054150..2054866 (+) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| V6C34_RS10210 (V6C34_10210) | - | 2054878..2055732 (+) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| V6C34_RS10215 (V6C34_10215) | - | 2055806..2055952 (+) | 147 | WP_000345949.1 | hypothetical protein | - |
| V6C34_RS10220 (V6C34_10220) | - | 2055949..2056134 (+) | 186 | WP_000109189.1 | hypothetical protein | - |
| V6C34_RS10225 (V6C34_10225) | - | 2056205..2056387 (+) | 183 | WP_000705245.1 | hypothetical protein | - |
| V6C34_RS10230 (V6C34_10230) | - | 2056466..2057179 (+) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| V6C34_RS10235 (V6C34_10235) | - | 2057370..2058407 (+) | 1038 | WP_000857200.1 | site-specific integrase | - |
| V6C34_RS10240 (V6C34_10240) | sph | 2058458..2059288 (+) | 831 | Protein_1982 | sphingomyelin phosphodiesterase | - |
| V6C34_RS10245 (V6C34_10245) | lukG | 2059526..2060542 (-) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| V6C34_RS10250 (V6C34_10250) | lukH | 2060564..2061619 (-) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| V6C34_RS10255 (V6C34_10255) | - | 2062055..2063278 (+) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| V6C34_RS10260 (V6C34_10260) | - | 2063722..2065029 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| V6C34_RS10265 (V6C34_10265) | groL | 2065569..2067185 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| V6C34_RS10270 (V6C34_10270) | groES | 2067261..2067545 (-) | 285 | WP_108720534.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=994237 V6C34_RS10125 WP_000934759.1 2046032..2046502(-) (ssbA) [Staphylococcus aureus strain BSN31]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=994237 V6C34_RS10125 WP_000934759.1 2046032..2046502(-) (ssbA) [Staphylococcus aureus strain BSN31]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |