Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   V6C34_RS07680 Genome accession   NZ_CP154861
Coordinates   1599028..1599474 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594028..1604474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C34_RS07650 (V6C34_07650) gcvPA 1594954..1596300 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  V6C34_RS07655 (V6C34_07655) gcvT 1596320..1597411 (-) 1092 WP_196755283.1 glycine cleavage system aminomethyltransferase GcvT -
  V6C34_RS07660 (V6C34_07660) - 1597570..1598094 (-) 525 WP_188352559.1 shikimate kinase -
  V6C34_RS07665 (V6C34_07665) - 1598084..1598230 (-) 147 WP_001792109.1 hypothetical protein -
  V6C34_RS07670 (V6C34_07670) comGF 1598327..1598824 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6C34_RS07675 (V6C34_07675) comGE 1598742..1599041 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  V6C34_RS07680 (V6C34_07680) comGD 1599028..1599474 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6C34_RS07685 (V6C34_07685) comGC 1599452..1599763 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  V6C34_RS07690 (V6C34_07690) comGB 1599777..1600847 (-) 1071 WP_031765079.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6C34_RS07695 (V6C34_07695) comGA 1600819..1601793 (-) 975 WP_334212660.1 competence type IV pilus ATPase ComGA Machinery gene
  V6C34_RS07700 (V6C34_07700) - 1601845..1602468 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  V6C34_RS07705 (V6C34_07705) - 1602465..1602794 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  V6C34_RS07710 (V6C34_07710) - 1602794..1603780 (-) 987 WP_000161314.1 ROK family glucokinase -
  V6C34_RS07715 (V6C34_07715) - 1603777..1603980 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=994221 V6C34_RS07680 WP_001788899.1 1599028..1599474(-) (comGD) [Staphylococcus aureus strain BSN31]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=994221 V6C34_RS07680 WP_001788899.1 1599028..1599474(-) (comGD) [Staphylococcus aureus strain BSN31]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment