Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAJG31_RS08035 Genome accession   NZ_CP154860
Coordinates   1550895..1552154 (-) Length   419 a.a.
NCBI ID   WP_279494233.1    Uniprot ID   -
Organism   Lysinibacillus sp. BS3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1545895..1557154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAJG31_RS08015 (AAJG31_08015) - 1545938..1546639 (-) 702 WP_279494237.1 CpsD/CapB family tyrosine-protein kinase -
  AAJG31_RS08020 (AAJG31_08020) - 1546639..1547367 (-) 729 WP_115673176.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  AAJG31_RS08025 (AAJG31_08025) rny 1547594..1549153 (-) 1560 WP_004224930.1 ribonuclease Y -
  AAJG31_RS08030 (AAJG31_08030) recA 1549669..1550733 (-) 1065 WP_016992835.1 recombinase RecA Machinery gene
  AAJG31_RS08035 (AAJG31_08035) cinA 1550895..1552154 (-) 1260 WP_279494233.1 competence/damage-inducible protein A Machinery gene
  AAJG31_RS08040 (AAJG31_08040) pgsA 1552171..1552749 (-) 579 WP_279494232.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAJG31_RS08045 (AAJG31_08045) - 1552797..1553726 (-) 930 WP_175400707.1 helix-turn-helix domain-containing protein -
  AAJG31_RS08050 (AAJG31_08050) - 1553743..1554528 (-) 786 WP_026023397.1 DUF3388 domain-containing protein -
  AAJG31_RS08055 (AAJG31_08055) - 1554745..1555002 (-) 258 WP_004224939.1 DUF3243 domain-containing protein -
  AAJG31_RS08060 (AAJG31_08060) - 1555048..1555776 (-) 729 WP_274771975.1 SDR family oxidoreductase -
  AAJG31_RS08065 (AAJG31_08065) - 1555773..1557074 (-) 1302 WP_259950896.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45262.61 Da        Isoelectric Point: 4.7188

>NTDB_id=994172 AAJG31_RS08035 WP_279494233.1 1550895..1552154(-) (cinA) [Lysinibacillus sp. BS3]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLDISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=994172 AAJG31_RS08035 WP_279494233.1 1550895..1552154(-) (cinA) [Lysinibacillus sp. BS3]
ATGAATGCTGAAATTCTTGCAGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAACAAGCTGGCCAGCTTATTAAGGCAAAGGTT
GCAGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACTGCTGGTTTATTTCAATCTGAACTTGCGGAAATTCCAG
GGGTAGGCAATGCACTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGACATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGTCTTACAGGAGAAGCAGGTCCCACTGCACATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATAAATGACGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAACTTTTAGAAGAACGTGGCTACACAAAACGATATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.431

91.408

0.415
  cinA Streptococcus pneumoniae Rx1

45.17

91.408

0.413
  cinA Streptococcus pneumoniae R6

45.17

91.408

0.413
  cinA Streptococcus pneumoniae TIGR4

45.17

91.408

0.413
  cinA Streptococcus pneumoniae D39

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.648

91.408

0.408
  cinA Streptococcus mutans UA159

43.799

90.453

0.396

Multiple sequence alignment