Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | QMG88_RS05260 | Genome accession | NZ_AP027052 |
| Coordinates | 1101377..1101697 (+) | Length | 106 a.a. |
| NCBI ID | WP_022551233.1 | Uniprot ID | U4KDA9 |
| Organism | Vibrio nigripulchritudo strain TUMSAT-V.nig3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1101377..1125057 | 1101377..1101697 | within | 0 |
Gene organization within MGE regions
Location: 1101377..1125057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG88_RS05260 (TUMSATVNIG3_09890) | comEA | 1101377..1101697 (+) | 321 | WP_022551233.1 | ComEA family DNA-binding protein | Machinery gene |
| QMG88_RS05265 (TUMSATVNIG3_09900) | rrtA | 1101754..1102320 (-) | 567 | WP_022598155.1 | rhombosortase | - |
| QMG88_RS05270 (TUMSATVNIG3_09910) | - | 1102309..1102929 (+) | 621 | WP_281829301.1 | DTW domain-containing protein | - |
| QMG88_RS05275 (TUMSATVNIG3_09920) | - | 1102962..1104281 (-) | 1320 | WP_281829303.1 | anti-phage deoxyguanosine triphosphatase | - |
| QMG88_RS05280 (TUMSATVNIG3_09930) | yfbR | 1104329..1104868 (-) | 540 | WP_345739828.1 | 5'-deoxynucleotidase | - |
| QMG88_RS05285 (TUMSATVNIG3_09940) | - | 1105055..1106182 (-) | 1128 | WP_158105397.1 | phospholipase D family protein | - |
| QMG88_RS05290 (TUMSATVNIG3_09950) | - | 1106441..1106728 (-) | 288 | WP_050923117.1 | hypothetical protein | - |
| QMG88_RS05295 (TUMSATVNIG3_09960) | - | 1106706..1107827 (-) | 1122 | WP_281829309.1 | hypothetical protein | - |
| QMG88_RS05300 (TUMSATVNIG3_09970) | - | 1108076..1108744 (-) | 669 | WP_281829311.1 | PHP domain-containing protein | - |
| QMG88_RS05305 (TUMSATVNIG3_09980) | - | 1109237..1109884 (+) | 648 | WP_281829313.1 | HEPN domain-containing protein | - |
| QMG88_RS05310 | - | 1110061..1110450 (+) | 390 | WP_281829314.1 | DeoR family transcriptional regulator | - |
| QMG88_RS05315 (TUMSATVNIG3_09990) | - | 1110486..1110959 (+) | 474 | WP_281830440.1 | WYL domain-containing protein | - |
| QMG88_RS05320 (TUMSATVNIG3_10000) | - | 1110956..1111867 (+) | 912 | WP_281829315.1 | dynamin family protein | - |
| QMG88_RS05325 (TUMSATVNIG3_10010) | - | 1112027..1113319 (+) | 1293 | WP_281829316.1 | dynamin family protein | - |
| QMG88_RS05330 (TUMSATVNIG3_10020) | - | 1113301..1113777 (+) | 477 | WP_281829318.1 | hypothetical protein | - |
| QMG88_RS05335 (TUMSATVNIG3_10030) | - | 1113944..1114195 (+) | 252 | WP_281829320.1 | hypothetical protein | - |
| QMG88_RS05340 (TUMSATVNIG3_10040) | - | 1114277..1115206 (+) | 930 | WP_158105392.1 | hypothetical protein | - |
| QMG88_RS05345 (TUMSATVNIG3_10050) | - | 1115218..1115517 (+) | 300 | WP_281829323.1 | hypothetical protein | - |
| QMG88_RS05350 (TUMSATVNIG3_10060) | - | 1115560..1116240 (+) | 681 | WP_281829325.1 | hypothetical protein | - |
| QMG88_RS05355 (TUMSATVNIG3_10070) | - | 1116206..1116820 (+) | 615 | WP_281829327.1 | hypothetical protein | - |
| QMG88_RS05360 (TUMSATVNIG3_10080) | - | 1116881..1117198 (+) | 318 | WP_281829329.1 | DUF87 domain-containing protein | - |
| QMG88_RS05365 (TUMSATVNIG3_10090) | - | 1117211..1117504 (+) | 294 | WP_281829331.1 | hypothetical protein | - |
| QMG88_RS05370 (TUMSATVNIG3_10100) | - | 1117591..1117938 (+) | 348 | WP_281829333.1 | hypothetical protein | - |
| QMG88_RS05375 (TUMSATVNIG3_10110) | - | 1117922..1118458 (+) | 537 | WP_281829335.1 | hypothetical protein | - |
| QMG88_RS05380 (TUMSATVNIG3_10120) | - | 1118458..1118652 (+) | 195 | WP_281829337.1 | hypothetical protein | - |
| QMG88_RS05385 (TUMSATVNIG3_10130) | - | 1118778..1119128 (+) | 351 | WP_281829339.1 | HNH endonuclease | - |
| QMG88_RS05390 (TUMSATVNIG3_10140) | - | 1119146..1119562 (+) | 417 | WP_158105390.1 | SMI1/KNR4 family protein | - |
| QMG88_RS05395 (TUMSATVNIG3_10150) | - | 1120163..1120477 (-) | 315 | WP_281829343.1 | helix-turn-helix domain-containing protein | - |
| QMG88_RS05400 (TUMSATVNIG3_10160) | - | 1120582..1121127 (+) | 546 | WP_215809152.1 | hypothetical protein | - |
| QMG88_RS05405 | - | 1121129..1122506 (+) | 1378 | Protein_1011 | DEAD/DEAH box helicase family protein | - |
| QMG88_RS05410 (TUMSATVNIG3_10210) | - | 1123002..1123367 (+) | 366 | WP_281829347.1 | hypothetical protein | - |
| QMG88_RS05415 | - | 1123510..1123689 (+) | 180 | WP_281829349.1 | hypothetical protein | - |
| QMG88_RS05420 (TUMSATVNIG3_10230) | - | 1124168..1124554 (+) | 387 | WP_281829351.1 | hypothetical protein | - |
| QMG88_RS05425 (TUMSATVNIG3_10240) | - | 1124554..1125057 (+) | 504 | WP_281829353.1 | WYL domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11208.93 Da Isoelectric Point: 9.8209
>NTDB_id=99366 QMG88_RS05260 WP_022551233.1 1101377..1101697(+) (comEA) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MKIIKLALIAALSLCSAVSANAWESNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL
MKIIKLALIAALSLCSAVSANAWESNSPSKAASSSDKHAGIEITVNINTATAEELQTLLIGIGAKKAKTIVEFREKNGLF
QSADDLSKVKGIGNATVDKNRDRILL
Nucleotide
Download Length: 321 bp
>NTDB_id=99366 QMG88_RS05260 WP_022551233.1 1101377..1101697(+) (comEA) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGAAAATCATAAAACTGGCTTTGATAGCCGCTCTTTCTCTTTGCTCTGCCGTTTCTGCAAACGCGTGGGAGTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCTGGAATAGAAATTACCGTAAACATCAATACAGCAACCGCTGAGG
AGCTACAAACGCTTTTAATCGGCATAGGTGCTAAGAAGGCGAAAACCATCGTAGAGTTTCGTGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGTAAAGTGAAGGGTATTGGCAACGCTACAGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G
ATGAAAATCATAAAACTGGCTTTGATAGCCGCTCTTTCTCTTTGCTCTGCCGTTTCTGCAAACGCGTGGGAGTCAAATTC
GCCATCTAAAGCGGCTTCAAGCAGTGATAAGCATGCTGGAATAGAAATTACCGTAAACATCAATACAGCAACCGCTGAGG
AGCTACAAACGCTTTTAATCGGCATAGGTGCTAAGAAGGCGAAAACCATCGTAGAGTTTCGTGAAAAGAACGGGTTATTT
CAGTCTGCAGACGATTTGAGTAAAGTGAAGGGTATTGGCAACGCTACAGTTGACAAGAATCGTGACCGAATTCTGCTGTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae strain A1552 |
56.122 |
92.453 |
0.519 |
| comEA | Vibrio cholerae C6706 |
56.122 |
92.453 |
0.519 |
| comEA | Vibrio campbellii strain DS40M4 |
56.842 |
89.623 |
0.509 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.037 |
100 |
0.453 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
61.842 |
71.698 |
0.443 |
| comEA | Acinetobacter baylyi ADP1 |
50 |
75.472 |
0.377 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
62.903 |
58.491 |
0.368 |