Detailed information NTG0992132

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHU63_RS21910
• Genome accession: NZ_CP153776
• Coordinates: 4524351..4525151 (+)
• Length: 266 a.a.
• NCBI ID: WP_032731627.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_BLD_115706
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4519351..4530151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHU63_RS21875 (AAHU63_21850)	gspH	4519504..4520019 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHU63_RS21880 (AAHU63_21855)	gspI	4520016..4520381 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHU63_RS21885 (AAHU63_21860)	gspJ	4520378..4520974 (+)	597	WP_032731630.1	type II secretion system minor pseudopilin GspJ	-
AAHU63_RS21890 (AAHU63_21865)	gspK	4520971..4521951 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AAHU63_RS21895 (AAHU63_21870)	gspL	4521944..4523140 (+)	1197	WP_032731629.1	type II secretion system protein GspL	-
AAHU63_RS21900 (AAHU63_21875)	-	4523133..4523618 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHU63_RS21905 (AAHU63_21880)	-	4523608..4524354 (+)	747	WP_032731628.1	type II secretion system protein N	-
AAHU63_RS21910 (AAHU63_21885)	pilD	4524351..4525151 (+)	801	WP_032731627.1	A24 family peptidase	Machinery gene
AAHU63_RS21915 (AAHU63_21890)	hrpB	4525198..4527627 (-)	2430	WP_032731626.1	ATP-dependent helicase HrpB	-
AAHU63_RS21920 (AAHU63_21895)	thpR	4527700..4528236 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHU63_RS21925 (AAHU63_21900)	sfsA	4528236..4528952 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AAHU63_RS21930 (AAHU63_21905)	dksA	4529115..4529570 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29463.17 Da
• Isoelectric Point: 8.7151

>NTDB_id=992132 AAHU63_RS21910 WP_032731627.1 4524351..4525151(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_115706]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992132 AAHU63_RS21910 WP_032731627.1 4524351..4525151(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_115706]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACACTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425