Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SP4011_RS02145 Genome accession   NZ_AP026968
Coordinates   385420..387399 (+) Length   659 a.a.
NCBI ID   WP_262081318.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 380420..392399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS02130 (SP4011_03610) - 380807..381640 (+) 834 WP_338619649.1 carbohydrate ABC transporter permease -
  SP4011_RS02135 (SP4011_03620) gtfA 381960..383402 (+) 1443 WP_112445793.1 sucrose phosphorylase -
  SP4011_RS02140 (SP4011_03630) - 383540..384733 (+) 1194 WP_173233271.1 O-antigen ligase family protein -
  SP4011_RS02145 (SP4011_03640) amiA3 385420..387399 (+) 1980 WP_262081318.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS02150 (SP4011_03650) amiC 387466..388962 (+) 1497 WP_077804683.1 ABC transporter permease Regulator
  SP4011_RS02155 (SP4011_03660) amiD 388962..389888 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  SP4011_RS02160 (SP4011_03670) amiE 389897..390964 (+) 1068 WP_000159551.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS02165 (SP4011_03680) amiF 390975..391901 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72486.58 Da        Isoelectric Point: 4.7690

>NTDB_id=99098 SP4011_RS02145 WP_262081318.1 385420..387399(+) (amiA3) [Streptococcus parapneumoniae strain SP4011]
MKKSRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYIYTADPETLDYLISSKNSTKVVTSNGIDGLFTNDNYGNLAP
AVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTSTDFSTV
GVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYW
DKENVHLDTINLAYYDGSDQESLERNFTSGAYSFARLFPTSSNYSKVAEEYKDNIYYTQPDSGIAGIGVNIDRQSYNYTS
KTTDSEKASTKKALLNKDFRQALNFAFDRSAYSAQINGKDGAALAVRNLFVKPDFVSVGEKTFGDLVAAQLPAYGDEWKG
VNLADGQDGLFNADKAKAEFAKAKKTLEADGVQFPIHLDVPVDQAAKGYISRIQSFKQSVETVLGAENVVVDIQQMTRDE
FLNITYYAANASAEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLFIPAMASAGAAPVLSRVVPFTGASAQTGSKGSDVYFKYLKLQDKAVTKKEYEKAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=99098 SP4011_RS02145 WP_262081318.1 385420..387399(+) (amiA3) [Streptococcus parapneumoniae strain SP4011]
ATGAAAAAAAGTCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGCAGCATGCAGTTCTTCAAA
ATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATATTTATACAGCAGACCCAGAAACCTTGGACTACCTGATTTCAA
GTAAAAATAGTACAAAAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAATTACGGGAATCTTGCTCCT
GCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTATACTTATAAGATTCGTAAAGGGGTTAAATGGTTTAC
CTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACGCAGCAGATAAAAAATCAG
AAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCAACAGATTTTTCAACAGTT
GGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTGGAACTCTAAGTTGACTTA
TTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAACCAACAGATCCGACATCCT
TGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTAAAAAATGAACAATATTGG
GACAAAGAAAACGTCCACCTAGATACTATAAATCTGGCTTACTATGATGGCTCAGATCAGGAGTCGCTAGAGCGTAACTT
CACTAGTGGAGCTTATAGTTTTGCTCGTCTTTTCCCTACCAGTTCCAACTACTCTAAGGTTGCAGAAGAATACAAGGACA
ATATCTATTACACACAACCAGACTCTGGGATTGCTGGTATAGGTGTGAATATTGATCGCCAAAGTTACAACTATACTTCT
AAAACTACCGATTCAGAGAAAGCCTCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCAAGCCTTGAATTTTGCTTT
TGATCGCTCAGCTTACTCTGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTAATTTATTTGTAAAACCAG
ACTTTGTTTCAGTTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCCTATGGAGATGAGTGGAAAGGT
GTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAATTTGCAAAAGCTAAGAAAACTTT
AGAAGCAGACGGCGTTCAGTTCCCTATTCATTTGGATGTTCCAGTAGACCAAGCAGCAAAAGGCTACATATCCCGTATTC
AGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGCTGAAAATGTCGTGGTTGATATTCAACAAATGACAAGAGATGAA
TTTCTTAATATCACTTACTATGCTGCTAATGCGTCAGCTGAGGATTGGGATGTATCGGGAGGAGTTTCATGGGGGCCAGA
CTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGTAGTGAAACTACAAAAACATATTTAGGATTTGATA
ATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAAGCTGCCAAAGAGACAAGC
GACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACTCTTTATTCCTGCTATGGC
TTCTGCTGGTGCAGCACCGGTGCTTTCACGAGTTGTTCCATTTACTGGAGCTTCTGCGCAAACAGGCTCTAAGGGGTCAG
ATGTTTACTTCAAATATTTGAAATTACAAGATAAAGCGGTGACTAAGAAAGAGTATGAAAAAGCTCGTGAAAAATGGTTG
AAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

67.273

100

0.674
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672
  amiA Streptococcus salivarius strain HSISS4

67.071

100

0.671

Multiple sequence alignment