Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SP4011_RS02155 Genome accession   NZ_AP026968
Coordinates   388962..389888 (+) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 383962..394888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS02145 (SP4011_03640) amiA3 385420..387399 (+) 1980 WP_262081318.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS02150 (SP4011_03650) amiC 387466..388962 (+) 1497 WP_077804683.1 ABC transporter permease Regulator
  SP4011_RS02155 (SP4011_03660) amiD 388962..389888 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  SP4011_RS02160 (SP4011_03670) amiE 389897..390964 (+) 1068 WP_000159551.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS02165 (SP4011_03680) amiF 390975..391901 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  SP4011_RS02170 (SP4011_03690) - 392460..393437 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -
  SP4011_RS02175 (SP4011_03700) - 393449..394342 (+) 894 WP_338619651.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=99100 SP4011_RS02155 WP_000103703.1 388962..389888(+) (amiD) [Streptococcus parapneumoniae strain SP4011]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=99100 SP4011_RS02155 WP_000103703.1 388962..389888(+) (amiD) [Streptococcus parapneumoniae strain SP4011]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTCTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTAGACCGTGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTAACAACATGGATCGGGATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTATCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTATCTCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment