Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SP4011_RS02165 Genome accession   NZ_AP026968
Coordinates   390975..391901 (+) Length   308 a.a.
NCBI ID   WP_042900321.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 385975..396901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS02150 (SP4011_03650) amiC 387466..388962 (+) 1497 WP_077804683.1 ABC transporter permease Regulator
  SP4011_RS02155 (SP4011_03660) amiD 388962..389888 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  SP4011_RS02160 (SP4011_03670) amiE 389897..390964 (+) 1068 WP_000159551.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS02165 (SP4011_03680) amiF 390975..391901 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  SP4011_RS02170 (SP4011_03690) - 392460..393437 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -
  SP4011_RS02175 (SP4011_03700) - 393449..394342 (+) 894 WP_338619651.1 ABC transporter permease -
  SP4011_RS02180 (SP4011_03710) - 394355..395158 (+) 804 WP_000157661.1 ABC transporter ATP-binding protein -
  SP4011_RS02185 (SP4011_03720) - 395455..395703 (+) 249 WP_000364990.1 YneF family protein -
  SP4011_RS02190 (SP4011_03730) racE 395903..396697 (+) 795 WP_173213163.1 glutamate racemase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34791.83 Da        Isoelectric Point: 6.5107

>NTDB_id=99102 SP4011_RS02165 WP_042900321.1 390975..391901(+) (amiF) [Streptococcus parapneumoniae strain SP4011]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=99102 SP4011_RS02165 WP_042900321.1 390975..391901(+) (amiF) [Streptococcus parapneumoniae strain SP4011]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTTGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CGATAATCGGTCTCAATGATACAAGTAATGGTGATATTATTTTTGAGGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCAGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAGTTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACCTGCTCAAAAAATTCCAAAAAGAACTCGGTTTGACTTATCTCTTCATCGCCCATGATTTGTCGGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTATAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGACAAACCTTCTATGGTTGAAATCCGTCCAGGTCATTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAACAAGGATTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment