Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SP4011_RS02150 Genome accession   NZ_AP026968
Coordinates   387466..388962 (+) Length   498 a.a.
NCBI ID   WP_077804683.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 382466..393962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS02140 (SP4011_03630) - 383540..384733 (+) 1194 WP_173233271.1 O-antigen ligase family protein -
  SP4011_RS02145 (SP4011_03640) amiA3 385420..387399 (+) 1980 WP_262081318.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS02150 (SP4011_03650) amiC 387466..388962 (+) 1497 WP_077804683.1 ABC transporter permease Regulator
  SP4011_RS02155 (SP4011_03660) amiD 388962..389888 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  SP4011_RS02160 (SP4011_03670) amiE 389897..390964 (+) 1068 WP_000159551.1 ABC transporter ATP-binding protein Regulator
  SP4011_RS02165 (SP4011_03680) amiF 390975..391901 (+) 927 WP_042900321.1 ATP-binding cassette domain-containing protein Regulator
  SP4011_RS02170 (SP4011_03690) - 392460..393437 (+) 978 WP_000869840.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55519.97 Da        Isoelectric Point: 9.3559

>NTDB_id=99099 SP4011_RS02150 WP_077804683.1 387466..388962(+) (amiC) [Streptococcus parapneumoniae strain SP4011]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLAGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=99099 SP4011_RS02150 WP_077804683.1 387466..388962(+) (amiC) [Streptococcus parapneumoniae strain SP4011]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTGACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAACACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAGGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGATATTGATCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTCGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGCACTAAACATAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAATTTTGTGAATATTAATTTAGGTGACTCCTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAACTACCAATATCCTTCAATGATTGCCAGCTCTGCTGTTGTAGGATTGATCGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTTTCAACAGGGGCT
TTGACCTTCTTGATGGCTCTTCCAACAATTGCCTTGGTTTATATCGTTCGTTTGGCTGGTTCTTCAATCGGTTTGCCAGA
TTCATTCCCTATCTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTGTTGGGTGCTCCGG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCTGTTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACCATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.506

100

0.765
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759

Multiple sequence alignment