Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAHH95_RS19625 Genome accession   NZ_CP152426
Coordinates   3862582..3863067 (-) Length   161 a.a.
NCBI ID   WP_342753068.1    Uniprot ID   -
Organism   Shouchella clausii strain TIL--21C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3857582..3868067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH95_RS19600 rplI 3858775..3859218 (-) 444 WP_011248935.1 50S ribosomal protein L9 -
  AAHH95_RS19605 - 3859215..3859583 (-) 369 WP_342753066.1 DHHA1 domain-containing protein -
  AAHH95_RS19610 - 3859558..3861186 (-) 1629 WP_342753067.1 DHH family phosphoesterase -
  AAHH95_RS19615 - 3861216..3862118 (-) 903 WP_011248937.1 YybS family protein -
  AAHH95_RS19620 rpsR 3862323..3862556 (-) 234 WP_011248938.1 30S ribosomal protein S18 -
  AAHH95_RS19625 ssbA 3862582..3863067 (-) 486 WP_342753068.1 single-stranded DNA-binding protein Machinery gene
  AAHH95_RS19630 rpsF 3863138..3863425 (-) 288 WP_011248940.1 30S ribosomal protein S6 -
  AAHH95_RS19635 ychF 3863740..3864839 (-) 1100 Protein_3829 redox-regulated ATPase YchF -
  AAHH95_RS19640 - 3864908..3865102 (-) 195 WP_035205683.1 DUF951 domain-containing protein -
  AAHH95_RS19645 - 3865166..3866194 (-) 1029 WP_035205682.1 membrane protein -
  AAHH95_RS19650 yyaC 3866280..3866912 (+) 633 WP_011248943.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17670.20 Da        Isoelectric Point: 4.6109

>NTDB_id=989297 AAHH95_RS19625 WP_342753068.1 3862582..3863067(-) (ssbA) [Shouchella clausii strain TIL--21C]
MLNRVVLVGRLTRDPELRFTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENNEGRRVFVTEIVAESVQFLEPRNSQNQSSGNNPGFDQYGAGNQGSGNQTGGSRSNGYDNDPFSNDGSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=989297 AAHH95_RS19625 WP_342753068.1 3862582..3863067(-) (ssbA) [Shouchella clausii strain TIL--21C]
TTGTTAAACCGTGTTGTTCTTGTCGGACGCTTAACGCGTGACCCTGAATTGCGATTCACGCCAAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCGAATTTCCTTAAAAAGGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATAATGAAGGCAGGCGCGTTTTTGTAACGGAAATCGTTGCTGAAAGCGTCCAATTTCTCGAACCTCGCAA
CAGTCAAAACCAATCCTCTGGGAATAATCCTGGTTTTGATCAGTACGGCGCTGGCAACCAAGGTTCTGGCAACCAAACTG
GTGGCAGCCGTTCTAATGGATATGATAACGACCCGTTCTCGAATGACGGTTCGATTGATATTTCCGACGATGATCTTCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.758
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.627
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

65.839

0.404
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.167

74.534

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

48.333

74.534

0.36
  ssbB/cilA Streptococcus pneumoniae D39

48.333

74.534

0.36
  ssbB/cilA Streptococcus pneumoniae R6

48.333

74.534

0.36
  ssbB/cilA Streptococcus mitis SK321

48.333

74.534

0.36

Multiple sequence alignment