Detailed information NTG0098928

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8570_RS09840
• Genome accession: NZ_AP026932
• Coordinates: 1928277..1928681 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588002.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900701549
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1923277..1933681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8570_RS09805 (PC1528_19330)	rnpA	1923699..1924070 (-)	372	WP_000739246.1	ribonuclease P protein component	-
R8570_RS09810 (PC1528_19340)	-	1924218..1925408 (-)	1191	WP_000167755.1	acetate kinase	-
R8570_RS09815 (PC1528_19350)	comYH	1925459..1926412 (-)	954	WP_000345086.1	class I SAM-dependent methyltransferase	Machinery gene
R8570_RS09820	-	1926473..1927060 (-)	588	Protein_1910	class I SAM-dependent methyltransferase	-
R8570_RS09825 (PC1528_19380)	comGG/cglG	1927197..1927610 (-)	414	WP_000265617.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8570_RS09830 (PC1528_19390)	comGF/cglF	1927588..1928049 (-)	462	WP_000250529.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8570_RS09835 (PC1528_19400)	comGE/cglE	1928012..1928314 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8570_RS09840 (PC1528_19410)	comGD/cglD	1928277..1928681 (-)	405	WP_000588002.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8570_RS09845 (PC1528_19420)	comGC/cglC	1928674..1929000 (-)	327	WP_000738623.1	comG operon protein ComGC	Machinery gene
R8570_RS09850 (PC1528_19430)	comGB/cglB	1929002..1930018 (-)	1017	WP_077141332.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8570_RS09855 (PC1528_19440)	comGA/cglA/cilD	1929966..1930907 (-)	942	WP_000249550.1	competence type IV pilus ATPase ComGA	Machinery gene
R8570_RS09860 (PC1528_19450)	-	1930983..1931348 (-)	366	WP_000286415.1	DUF1033 family protein	-
R8570_RS09865 (PC1528_19460)	-	1931499..1932557 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14667.82 Da
• Isoelectric Point: 10.2164

>NTDB_id=98928 R8570_RS09840 WP_000588002.1 1928277..1928681(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900701549]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTNLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=98928 R8570_RS09840 WP_000588002.1 1928277..1928681(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900701549]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAATCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	96.269	100	0.963
comGD/cglD	Streptococcus pneumoniae Rx1	95.522	100	0.955
comGD/cglD	Streptococcus pneumoniae D39	95.522	100	0.955
comGD/cglD	Streptococcus pneumoniae R6	95.522	100	0.955
comGD/cglD	Streptococcus mitis NCTC 12261	95.489	99.254	0.948
comGD/cglD	Streptococcus mitis SK321	94.776	100	0.948
comYD	Streptococcus gordonii str. Challis substr. CH1	57.48	94.776	0.545
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47