Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   R8570_RS09825 Genome accession   NZ_AP026932
Coordinates   1927197..1927610 (-) Length   137 a.a.
NCBI ID   WP_000265617.1    Uniprot ID   A0A064C498
Organism   Streptococcus pneumoniae strain PZ900701549     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1922197..1932610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8570_RS09800 (PC1528_19320) - 1922900..1923724 (-) 825 WP_201417363.1 membrane protein insertase YidC -
  R8570_RS09805 (PC1528_19330) rnpA 1923699..1924070 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8570_RS09810 (PC1528_19340) - 1924218..1925408 (-) 1191 WP_000167755.1 acetate kinase -
  R8570_RS09815 (PC1528_19350) comYH 1925459..1926412 (-) 954 WP_000345086.1 class I SAM-dependent methyltransferase Machinery gene
  R8570_RS09820 - 1926473..1927060 (-) 588 Protein_1910 class I SAM-dependent methyltransferase -
  R8570_RS09825 (PC1528_19380) comGG/cglG 1927197..1927610 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8570_RS09830 (PC1528_19390) comGF/cglF 1927588..1928049 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8570_RS09835 (PC1528_19400) comGE/cglE 1928012..1928314 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8570_RS09840 (PC1528_19410) comGD/cglD 1928277..1928681 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8570_RS09845 (PC1528_19420) comGC/cglC 1928674..1929000 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  R8570_RS09850 (PC1528_19430) comGB/cglB 1929002..1930018 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8570_RS09855 (PC1528_19440) comGA/cglA/cilD 1929966..1930907 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  R8570_RS09860 (PC1528_19450) - 1930983..1931348 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8570_RS09865 (PC1528_19460) - 1931499..1932557 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15888.33 Da        Isoelectric Point: 10.2476

>NTDB_id=98925 R8570_RS09825 WP_000265617.1 1927197..1927610(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900701549]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=98925 R8570_RS09825 WP_000265617.1 1927197..1927610(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900701549]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A064C498

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comGG/cglG Streptococcus mitis SK321

85.95

88.321

0.759

  comYG Streptococcus mutans UA140

38.06

97.81

0.372

  comYG Streptococcus mutans UA159

38.06

97.81

0.372


Multiple sequence alignment